Non-Coding RNA Search

Ss1.1-reru19c_p16.5

Sequence:


               
               ACGGGTCAGACAGAGGAGGTTTAATGTTTTTCTCATAGGACGCTTGACAGCATAAAATAA
AAACAAATTCTTTCAGTCAAAGGTTTTTTTTTTTTTTTTTCCTTAACTGGTTTTAGAAAA
CTTCAGACCCAGACACAGGACCCAGCGACACATTCCTGGACAGCAAGATACTATAATGGC
GACCCCAATCTGTTTCATCATCTGGGTGTTATTCATAACAGATAGTGTCTGGACTCGAAG
TGTGAGGCAGGTTTATGAGGCAAATGATCCAGAGGACTGGACTATGCATGACTTTGATTG
TCCCAGGGAGTGTTTCTGTCCCCCAAGTTTCCCAACTGCTTTATACTGTGAAAACCGAGG
CCTCAAAGAAATCCCTGCTATACCATCAAGAATCTGGTATCTTTATCTTGAAAACAATCT
GATAGAAACCATTCCTGAGAAGCCATTTGAGAATGCCACACAGCTGAGATGGATAAATCT
AAATAAGAACAAAATAACCAACTATGGGATTGAAAAAGGAGCCCTGAGTCAACTGAAGAA
GCTGCTTTTCTTATTTCTGGAAGATAATGAGCTAGAGGAGGTACCTTCTCCATTGCCAAG
AAGTTTAGAACAATTACAATTAGCTAGAAACAAGGTGTCCAGGATTCCTCAAGGGACCTT
CAGCAATCTGGAGAACCTGACCCTTCTTGACCTGCAGCACAATAAATTATGGGACAATGC
CTTTCAAAGAGACACTTTTAAGGGACTCAAGAACCTCATGCAACTAAATATGGCTAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGTCAGACAGAGGAGGTTTAATGTTTTTCTCATAGGACGCTTGACAGCATAAAATAA
AAACAAATTCTTTCAGTCAAAGGTTTTTTTTTTTTTTTTTCCTTAACTGGTTTTAGAAAA
CTTCAGACCCAGACACAGGACCCAGCGACACATTCCTGGACAGCAAGATACTATAATGGC
GACCCCAATCTGTTTCATCATCTGGGTGTTATTCATAACAGATAGTGTCTGGACTCGAAG
TGTGAGGCAGGTTTATGAGGCAAATGATCCAGAGGACTGGACTATGCATGACTTTGATTG
TCCCAGGGAGTGTTTCTGTCCCCCAAGTTTCCCAACTGCTTTATACTGTGAAAACCGAGG
CCTCAAAGAAATCCCTGCTATACCATCAAGAATCTGGTATCTTTATCTTGAAAACAATCT
GATAGAAACCATTCCTGAGAAGCCATTTGAGAATGCCACACAGCTGAGATGGATAAATCT
AAATAAGAACAAAATAACCAACTATGGGATTGAAAAAGGAGCCCTGAGTCAACTGAAGAA
GCTGCTTTTCTTATTTCTGGAAGATAATGAGCTAGAGGAGGTACCTTCTCCATTGCCAAG
AAGTTTAGAACAATTACAATTAGCTAGAAACAAGGTGTCCAGGATTCCTCAAGGGACCTT
CAGCAATCTGGAGAACCTGACCCTTCTTGACCTGCAGCACAATAAATTATGGGACAATGC
CTTTCAAAGAGACACTTTTAAGGGACTCAAGAACCTCATGCAACTAAATATGGCTAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1245170|gb|AAC48568.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1245170|gb|AAC48568.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               494-613, - strand, RNAz p=0.977902

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               494-613, - strand, RNAz p=0.977902

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               166-780, gnl|bosTau2|chr5 (13883418-13884032)
               

               
               166-780, gnl|Hg17|chr12 (89952536-89951922)
               

               
               166-780, gnl|Mm7|chr10 (97171258-97171875)
               


               
               295-774, gnl|bosTau2|chr16 (2620221-2620694)
               

               
               295-774, gnl|Hg17|chr1 (200184182-200184655)
               

               
               295-774, gnl|Mm7|chr1 (133804990-133804517)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-780, gnl|bosTau2|chr5 (13883418-13884032)
               

               
               166-780, gnl|Hg17|chr12 (89952536-89951922)
               

               
               166-780, gnl|Mm7|chr10 (97171258-97171875)
               


               
               295-774, gnl|bosTau2|chr16 (2620221-2620694)
               

               
               295-774, gnl|Hg17|chr1 (200184182-200184655)
               

               
               295-774, gnl|Mm7|chr1 (133804990-133804517)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	166-780, gnl\|bosTau2\|chr5 (13883418-13884032)
	166-780, gnl\|Hg17\|chr12 (89952536-89951922)
	166-780, gnl\|Mm7\|chr10 (97171258-97171875)

	295-774, gnl\|bosTau2\|chr16 (2620221-2620694)
	295-774, gnl\|Hg17\|chr1 (200184182-200184655)
	295-774, gnl\|Mm7\|chr1 (133804990-133804517)