Non-Coding RNA Search

Ss1.1-reru21c_l24.5

Sequence:


               
               ATATGTGGTGCTACGGGCCAGGATTAGGAATTTGGGTTCCGAGGTTCACCTCATTGAAGA
TCTGATGGACCCATATCTTCAGCATGGGGAACAGGGTATAATGTTCACCACCTTGAAGGC
ATGTTACTACCAGATCCAGCGTGAGAAGCTTAACTAGGCTGCATAACAGCTTGACAACTG
GATTATCTATTCAGAGTGTTTTAGCACCATCTGCCATCTTCCTGTGGTGGCAAACAAAGA
ATGGTGTTGAAATGAGGACGTTGTATTATTTTGGTTGTTGTTTCTGAGCCTTGCTAATGA
TTGGAGCTCTGAGCCCAGACTAAAAGTAGTTGAAGGGGAGGATTGACAAGGAGGAAGAAA
TCAGATCGACTTTAGTCCCTGGCCTACGTTAAGTTCCCCAAATATGCATCTACTGTTGAA
AAAAAGAGGCTCTCCCTTCCTACAGTAAAGAGTATGCCAGCTCATGAAGTTGTAAGAAAA
AACTCTCAGTATAGCTTCTTCTATTAAGGAAGTGAATGAATATTTTTGAGCTTCCGGTTT
GCCTGCAGTTACCCCAGACCCTTTGCAAGGAGCAGATTGTACTGGAAACTACAGTCGCCA
CACTCTGCCTTCCTCAATTCCTTGCAGTCATGTGTGCACCATTTCTTCTTTGCTGAGGGA
GGGGAAAGAGGAACTTTTAAACTGCAGTTTTAACTTTTTTAAGCTTTTCCACCAGGGTAT
TCATGATGGGAGAGGTTCTGTGCCGTTAGTACCACACCGTAACCCCCAGCATGGAGCACG
TCCAAATAGGAGCCTTCTGCCTCCTGACTAGGAAAGTACGTAGGAATTTTGTTCTTGGAT
TCCTTACAAGGCTACAGAGTGAATACACTGGAATTCTGACACTGGCTCTGAGCTGCTACG
GAACCCCATTCATCCATGTGCAAACGCTGTATCCCGAGGCCTGTGAATGAGAGCCTGAAG
AGCTTCGGCATGCAGGCTATGTTCGGAGCAGGACTAGAGACTGGGAAATACGGAAGCAAG
AACCGCATCTGTCCTTGACCTGGTATTGTGGTCCTCCCCATACCTCGCACTGAACTCACA
GAGGGGAAGGAAAAGGAAACACGCTTTGGCTTTTCCCCTATCAAAAGTGTTGTGACCCCT
CGAGCTTTTAACCTTCTAGTGTTTCGCTTTGGGCCTTTTTTTTTTTTTTTTTTTTTGAAT
GTCCTGTTATAAGTGGTTGGTTTACATTGTTCAAGTAACACTAGTAGCTGTTTGAGATAA
CATAGGTGCTCTTCCCGTCTCATCTCCTCCACACCAGAGTGAGCGTACGGAGTATTCTCC
TGCTTTATGTTAACATCAGCAGATGTTAATCAATTTTCAAAAAGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGTGGTGCTACGGGCCAGGATTAGGAATTTGGGTTCCGAGGTTCACCTCATTGAAGA
TCTGATGGACCCATATCTTCAGCATGGGGAACAGGGTATAATGTTCACCACCTTGAAGGC
ATGTTACTACCAGATCCAGCGTGAGAAGCTTAACTAGGCTGCATAACAGCTTGACAACTG
GATTATCTATTCAGAGTGTTTTAGCACCATCTGCCATCTTCCTGTGGTGGCAAACAAAGA
ATGGTGTTGAAATGAGGACGTTGTATTATTTTGGTTGTTGTTTCTGAGCCTTGCTAATGA
TTGGAGCTCTGAGCCCAGACTAAAAGTAGTTGAAGGGGAGGATTGACAAGGAGGAAGAAA
TCAGATCGACTTTAGTCCCTGGCCTACGTTAAGTTCCCCAAATATGCATCTACTGTTGAA
AAAAAGAGGCTCTCCCTTCCTACAGTAAAGAGTATGCCAGCTCATGAAGTTGTAAGAAAA
AACTCTCAGTATAGCTTCTTCTATTAAGGAAGTGAATGAATATTTTTGAGCTTCCGGTTT
GCCTGCAGTTACCCCAGACCCTTTGCAAGGAGCAGATTGTACTGGAAACTACAGTCGCCA
CACTCTGCCTTCCTCAATTCCTTGCAGTCATGTGTGCACCATTTCTTCTTTGCTGAGGGA
GGGGAAAGAGGAACTTTTAAACTGCAGTTTTAACTTTTTTAAGCTTTTCCACCAGGGTAT
TCATGATGGGAGAGGTTCTGTGCCGTTAGTACCACACCGTAACCCCCAGCATGGAGCACG
TCCAAATAGGAGCCTTCTGCCTCCTGACTAGGAAAGTACGTAGGAATTTTGTTCTTGGAT
TCCTTACAAGGCTACAGAGTGAATACACTGGAATTCTGACACTGGCTCTGAGCTGCTACG
GAACCCCATTCATCCATGTGCAAACGCTGTATCCCGAGGCCTGTGAATGAGAGCCTGAAG
AGCTTCGGCATGCAGGCTATGTTCGGAGCAGGACTAGAGACTGGGAAATACGGAAGCAAG
AACCGCATCTGTCCTTGACCTGGTATTGTGGTCCTCCCCATACCTCGCACTGAACTCACA
GAGGGGAAGGAAAAGGAAACACGCTTTGGCTTTTCCCCTATCAAAAGTGTTGTGACCCCT
CGAGCTTTTAACCTTCTAGTGTTTCGCTTTGGGCCTTTTTTTTTTTTTTTTTTTTTGAAT
GTCCTGTTATAAGTGGTTGGTTTACATTGTTCAAGTAACACTAGTAGCTGTTTGAGATAA
CATAGGTGCTCTTCCCGTCTCATCTCCTCCACACCAGAGTGAGCGTACGGAGTATTCTCC
TGCTTTATGTTAACATCAGCAGATGTTAATCAATTTTCAAAAAGGATC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               112-1368, gnl|bosTau2|chr2 (52758442-52759686)
               

               
               112-1368, gnl|Hg17|chr2 (202392125-202390891)
               

               
               112-1368, gnl|Mm7|chr1 (59415380-59414197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-1368, gnl|bosTau2|chr2 (52758442-52759686)
               

               
               112-1368, gnl|Hg17|chr2 (202392125-202390891)
               

               
               112-1368, gnl|Mm7|chr1 (59415380-59414197)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               gul (0.177588)
               

               
               pty (0.142714)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               pty (0.142714)
               

               
               eru (0.120048)

	112-1368, gnl\|bosTau2\|chr2 (52758442-52759686)
	112-1368, gnl\|Hg17\|chr2 (202392125-202390891)
	112-1368, gnl\|Mm7\|chr1 (59415380-59414197)