Non-Coding RNA Search

Ss1.1-reru22c_d15.5

Sequence:


               
               TCACTTCCTGGTTGGATGGATGGAGCCGGGCGGGAGCGCGCACGGGGGAGGGGTGGCGGG
TCAGTCTCCGCCGGGCGCTCCGGGGATCAGCTGGCGGGCGGGCGCCGAACGCTGCCCCGG
CTCTAGCTGCAGCGCCGCCTCCTCACAGCTTCGCAGGCCGGCCCGGCGGCCGTGACAATG
TTGCGGGGCTGGTAGCTGGGCGCCGGCCCGCCGAGCCATCTCAAGTTTAAACTTACACGA
ATCGCTCTGTTGAGGAGGAGGGGACCGCCGCGCGATTGACACGCATATTCCTATAGGCAT
CCTCCCCCAGCCCCCACCCCCACGGCCGGATTCGGGTGGCTCCTCTCCGAGCTGAAATCC
GAGAAGAAATCCTTGGATCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTTCCTGGTTGGATGGATGGAGCCGGGCGGGAGCGCGCACGGGGGAGGGGTGGCGGG
TCAGTCTCCGCCGGGCGCTCCGGGGATCAGCTGGCGGGCGGGCGCCGAACGCTGCCCCGG
CTCTAGCTGCAGCGCCGCCTCCTCACAGCTTCGCAGGCCGGCCCGGCGGCCGTGACAATG
TTGCGGGGCTGGTAGCTGGGCGCCGGCCCGCCGAGCCATCTCAAGTTTAAACTTACACGA
ATCGCTCTGTTGAGGAGGAGGGGACCGCCGCGCGATTGACACGCATATTCCTATAGGCAT
CCTCCCCCAGCCCCCACCCCCACGGCCGGATTCGGGTGGCTCCTCTCCGAGCTGAAATCC
GAGAAGAAATCCTTGGATCTCTTG

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-226, gnl|bosTau2|chr11 (48710982-48711210)
               

               
               1-226, gnl|canFam2|chr10 (71492404-71492703)
               

               
               1-226, gnl|echTel1|scaffold_315798 (29193-28858)
               

               
               1-226, gnl|hg17|chr2 (69782293-69782632)
               

               
               1-226, gnl|Hg17|chr2 (69782584-69782356)
               

               
               1-226, gnl|loxAfr1|scaffold_18938 (29611-29950)
               

               
               1-226, gnl|mm7|chr6 (86924778-86924486)
               

               
               1-226, gnl|Mm7|chr6 (86924533-86924739)
               

               
               1-226, gnl|monDom2|scaffold_1 (96523851-96524214)
               

               
               1-226, gnl|oryCun1|scaffold_202799 (41579-41240)
               

               
               1-226, gnl|panTro1|chr12 (72030801-72031140)
               

               
               1-226, gnl|rheMac2|chr13 (69891009-69891348)
               

               
               1-226, gnl|rn3|chr4 (121252718-121252432)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-226, gnl|bosTau2|chr11 (48710982-48711210)
               

               
               1-226, gnl|canFam2|chr10 (71492404-71492703)
               

               
               1-226, gnl|echTel1|scaffold_315798 (29193-28858)
               

               
               1-226, gnl|hg17|chr2 (69782293-69782632)
               

               
               1-226, gnl|Hg17|chr2 (69782584-69782356)
               

               
               1-226, gnl|loxAfr1|scaffold_18938 (29611-29950)
               

               
               1-226, gnl|mm7|chr6 (86924778-86924486)
               

               
               1-226, gnl|Mm7|chr6 (86924533-86924739)
               

               
               1-226, gnl|monDom2|scaffold_1 (96523851-96524214)
               

               
               1-226, gnl|oryCun1|scaffold_202799 (41579-41240)
               

               
               1-226, gnl|panTro1|chr12 (72030801-72031140)
               

               
               1-226, gnl|rheMac2|chr13 (69891009-69891348)
               

               
               1-226, gnl|rn3|chr4 (121252718-121252432)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	1-226, gnl\|bosTau2\|chr11 (48710982-48711210)
	1-226, gnl\|canFam2\|chr10 (71492404-71492703)
	1-226, gnl\|echTel1\|scaffold_315798 (29193-28858)
	1-226, gnl\|hg17\|chr2 (69782293-69782632)
	1-226, gnl\|Hg17\|chr2 (69782584-69782356)
	1-226, gnl\|loxAfr1\|scaffold_18938 (29611-29950)
	1-226, gnl\|mm7\|chr6 (86924778-86924486)
	1-226, gnl\|Mm7\|chr6 (86924533-86924739)
	1-226, gnl\|monDom2\|scaffold_1 (96523851-96524214)
	1-226, gnl\|oryCun1\|scaffold_202799 (41579-41240)
	1-226, gnl\|panTro1\|chr12 (72030801-72031140)
	1-226, gnl\|rheMac2\|chr13 (69891009-69891348)
	1-226, gnl\|rn3\|chr4 (121252718-121252432)