Non-Coding RNA Search

Ss1.1-reru24c_d17.5

Sequence:


               
               TCTGTCCGAAATGCTTCCATTTTTGCCTTTTTCTACAGTTAGGCTAATTTTGAAATGTAT
GAAATTCTATGCAACATTTGTGTTGAGTTACTAATGGAAGCCAAAAGTTTTCTTCCCAAA
CTGCCAAGAATTTTACAGGCCATCAATGAAAGGGGAATACCTTTTAATTTAAGTGGGTGG
GTGGGGTAGGGGTGGGACGAGGAACGAGACTTGCCTAGACCTTTGTTGTATCCTGGGGAC
ATTTTTTTAATTTGATTGTTGATGCTTAAACTTCAGAATTCTGTGTATTCAAATTTGATC
ATGGCGAATCTACTTCAAAAGAAAAAAAAATCCAACTTTGTGGATATGAAATGGAAAGTT
TGCTGTTTTGATCTAGTTGTTTCCAGTGGAGCAGTTTATGAAATATGTTCTATAAGATGT
ACATTTTTTCATTGTAACATAGAAATTGTAAATAATTGATTAAAGTGCTGCATTTTGATG
AATTTTTTCTAGCCATTTTTAAAGAGAAAACTAGGAATTGAGTATTTTGTGTACGGTATG
TTTCCCTCCCCCCGTCCCACCCTCCCCTCCCTATTTAATTTTCATTTGCATGAGGTTTTT
GGATTTGCCAGTGATCTGCCGGAGATCATGCCCCACGTCATAGAGAATAAAGCTGATGAT
TGTACCAGTCTTAAATTATTCATGATTCAATAAAATTGATGCTTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTCCGAAATGCTTCCATTTTTGCCTTTTTCTACAGTTAGGCTAATTTTGAAATGTAT
GAAATTCTATGCAACATTTGTGTTGAGTTACTAATGGAAGCCAAAAGTTTTCTTCCCAAA
CTGCCAAGAATTTTACAGGCCATCAATGAAAGGGGAATACCTTTTAATTTAAGTGGGTGG
GTGGGGTAGGGGTGGGACGAGGAACGAGACTTGCCTAGACCTTTGTTGTATCCTGGGGAC
ATTTTTTTAATTTGATTGTTGATGCTTAAACTTCAGAATTCTGTGTATTCAAATTTGATC
ATGGCGAATCTACTTCAAAAGAAAAAAAAATCCAACTTTGTGGATATGAAATGGAAAGTT
TGCTGTTTTGATCTAGTTGTTTCCAGTGGAGCAGTTTATGAAATATGTTCTATAAGATGT
ACATTTTTTCATTGTAACATAGAAATTGTAAATAATTGATTAAAGTGCTGCATTTTGATG
AATTTTTTCTAGCCATTTTTAAAGAGAAAACTAGGAATTGAGTATTTTGTGTACGGTATG
TTTCCCTCCCCCCGTCCCACCCTCCCCTCCCTATTTAATTTTCATTTGCATGAGGTTTTT
GGATTTGCCAGTGATCTGCCGGAGATCATGCCCCACGTCATAGAGAATAAAGCTGATGAT
TGTACCAGTCTTAAATTATTCATGATTCAATAAAATTGATGCTTATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               570-687, - strand, RNAz p=0.53061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               570-687, - strand, RNAz p=0.53061

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-708, gnl|bosTau2|chr29 (17464860-17464150)
               

               
               1-708, gnl|Hg17|chr11 (20098995-20099716)
               

               
               1-708, gnl|Mm7|chr7 (45830053-45830748)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr29 (17464860-17464150)
               

               
               1-708, gnl|Hg17|chr11 (20098995-20099716)
               

               
               1-708, gnl|Mm7|chr7 (45830053-45830748)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	1-708, gnl\|bosTau2\|chr29 (17464860-17464150)
	1-708, gnl\|Hg17\|chr11 (20098995-20099716)
	1-708, gnl\|Mm7\|chr7 (45830053-45830748)