Non-Coding RNA Search

Ss1.1-reru24c_l6.5

Sequence:


               
               GAGAGCAGGCAGGGTAGCAGTTTGCACACGAGAGGGGAATTCAGCAACAGGAGGGATTCC
TGGGCCTCCTCTTCCATTTCTTGTGTGAGAAAGGTGTTTCCCCACCACCCCTGGCAGTGA
GAGGTGACAGAACCACCCTGGGGGGCTTTCTCTGAGCCCAGCCTGGGGCTCTCGAGGTTT
TCCTGAGAACCAAAGTTTGCGGGACAAGGGCAGGGAGCTCATGGGAAGAAAGCAAGCGAG
CCCTGGGTAGGGATGCTTGGTGCTGTTCCCTTCAGCCTTCAAGGCAAGTGCCCATCTTGC
CCCTCTGGCTCCTGAGTCAGAGGCTTGAGGTTTGCCAGCTGCACTGTGGCTTCAGGTGGA
AGGAAGCAGACTTGCTCCTCCAGGGCCCTTTGTTCAGGAAGATGTTTCTTTAACCCCATA
TGGTCCAAGAGTAGCTTAAGGAGGCCCTTTAAGGAGGGAATGAGTCAGTTACCAGCTCTA
GGGAGGAGGGTCAGTCTTAAGTGTGTTGCATGGCTGGAGCTGGAGCTAAAACACAGAACT
GAGCATCCAACACTCATTGATTAAGGACCAAAATCCAGGATACACACACGTGAAGGATCA
AGAGTCCCACTTCCTTATTCTGCCGAAGAAAAAAGGTGAGGGATGAACTCACCGAACCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGCAGGCAGGGTAGCAGTTTGCACACGAGAGGGGAATTCAGCAACAGGAGGGATTCC
TGGGCCTCCTCTTCCATTTCTTGTGTGAGAAAGGTGTTTCCCCACCACCCCTGGCAGTGA
GAGGTGACAGAACCACCCTGGGGGGCTTTCTCTGAGCCCAGCCTGGGGCTCTCGAGGTTT
TCCTGAGAACCAAAGTTTGCGGGACAAGGGCAGGGAGCTCATGGGAAGAAAGCAAGCGAG
CCCTGGGTAGGGATGCTTGGTGCTGTTCCCTTCAGCCTTCAAGGCAAGTGCCCATCTTGC
CCCTCTGGCTCCTGAGTCAGAGGCTTGAGGTTTGCCAGCTGCACTGTGGCTTCAGGTGGA
AGGAAGCAGACTTGCTCCTCCAGGGCCCTTTGTTCAGGAAGATGTTTCTTTAACCCCATA
TGGTCCAAGAGTAGCTTAAGGAGGCCCTTTAAGGAGGGAATGAGTCAGTTACCAGCTCTA
GGGAGGAGGGTCAGTCTTAAGTGTGTTGCATGGCTGGAGCTGGAGCTAAAACACAGAACT
GAGCATCCAACACTCATTGATTAAGGACCAAAATCCAGGATACACACACGTGAAGGATCA
AGAGTCCCACTTCCTTATTCTGCCGAAGAAAAAAGGTGAGGGATGAACTCACCGAACCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               56-253, - strand, RNAz p=0.997457
               

               
               293-410, + strand, RNAz p=0.907484

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               56-253, - strand, RNAz p=0.997457
               

               
               293-410, + strand, RNAz p=0.907484

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_198686, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_198686, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               16-482, gnl|bosTau2|chr10 (52386904-52386434)
               

               
               16-482, gnl|canFam2|chr8 (42359672-42360611)
               

               
               16-482, gnl|dasNov1|scaffold_13137 (8544-7587)
               

               
               16-482, gnl|echTel1|scaffold_211816 (11003-11852)
               

               
               16-482, gnl|hg17|chr14 (64483240-64484175)
               

               
               16-482, gnl|Hg17|chr14 (64483744-64483313)
               

               
               16-482, gnl|mm7|chr12 (74757476-74758334)
               

               
               16-482, gnl|monDom2|scaffold_8 (78802846-78804047)
               

               
               16-482, gnl|oryCun1|scaffold_181421 (43739-42907)
               

               
               16-482, gnl|panTro1|chr15 (64086270-64087205)
               

               
               16-482, gnl|rheMac2|chr7 (127947023-127947950)
               

               
               16-482, gnl|rn3|chr6 (99383244-99384152)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-482, gnl|bosTau2|chr10 (52386904-52386434)
               

               
               16-482, gnl|canFam2|chr8 (42359672-42360611)
               

               
               16-482, gnl|dasNov1|scaffold_13137 (8544-7587)
               

               
               16-482, gnl|echTel1|scaffold_211816 (11003-11852)
               

               
               16-482, gnl|hg17|chr14 (64483240-64484175)
               

               
               16-482, gnl|Hg17|chr14 (64483744-64483313)
               

               
               16-482, gnl|mm7|chr12 (74757476-74758334)
               

               
               16-482, gnl|monDom2|scaffold_8 (78802846-78804047)
               

               
               16-482, gnl|oryCun1|scaffold_181421 (43739-42907)
               

               
               16-482, gnl|panTro1|chr15 (64086270-64087205)
               

               
               16-482, gnl|rheMac2|chr7 (127947023-127947950)
               

               
               16-482, gnl|rn3|chr6 (99383244-99384152)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               ebs (0.118301)

	56-253, - strand, RNAz p=0.997457
	293-410, + strand, RNAz p=0.907484

	16-482, gnl\|bosTau2\|chr10 (52386904-52386434)
	16-482, gnl\|canFam2\|chr8 (42359672-42360611)
	16-482, gnl\|dasNov1\|scaffold_13137 (8544-7587)
	16-482, gnl\|echTel1\|scaffold_211816 (11003-11852)
	16-482, gnl\|hg17\|chr14 (64483240-64484175)
	16-482, gnl\|Hg17\|chr14 (64483744-64483313)
	16-482, gnl\|mm7\|chr12 (74757476-74758334)
	16-482, gnl\|monDom2\|scaffold_8 (78802846-78804047)
	16-482, gnl\|oryCun1\|scaffold_181421 (43739-42907)
	16-482, gnl\|panTro1\|chr15 (64086270-64087205)
	16-482, gnl\|rheMac2\|chr7 (127947023-127947950)
	16-482, gnl\|rn3\|chr6 (99383244-99384152)