Non-Coding RNA Search

Ss1.1-reru26c_g16.5

Sequence:


               
               CCACTGGGCCTGGAGGGGCTCAACATGCTGAGCGACCCCTGTGCCCTGCTGCCCGACCCT
GCTGTGGAGGACTCGTTCCGCAGTGACCGGCTGCAGTGAGGGCACCTGATCGCCATCCCT
CTCCTCGGCCCTGTCCCCCGCCGTCACTGTCCCTTTTCTCCCTTCCCCCTGGCCAGTAGA
GACTCCACTCTCTGCCCCCAGATCCTCTTTCTAACGTGAACGAGGGATCCTAAGAATGAG
AAGAAGCAAGGGGTGTGTCCAGGTGGCCCCTAAATTCTGCACAAAGGGTGGGCCTAGGGG
AGCTCAAGGGAGGGCCTGAAGCACTTGTAACTTTGAACCGTCTGTCTGGAGGTCAGAGCC
TGTTGGAAAGCAGGGGGGTAGAGGGGAGCCCCGGAGGCAGGGCTTGTCCGGATGCCTAGG
GGTGGGCAGTGCCAGCCCCTCCTCGCCACTCTTCCCCTTGCAATGGAGGAAAGAGCCAGA
GTGGATATTATTTTTTATTAAATATATTATATGTTAATAAAAAAATCATATCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTGGGCCTGGAGGGGCTCAACATGCTGAGCGACCCCTGTGCCCTGCTGCCCGACCCT
GCTGTGGAGGACTCGTTCCGCAGTGACCGGCTGCAGTGAGGGCACCTGATCGCCATCCCT
CTCCTCGGCCCTGTCCCCCGCCGTCACTGTCCCTTTTCTCCCTTCCCCCTGGCCAGTAGA
GACTCCACTCTCTGCCCCCAGATCCTCTTTCTAACGTGAACGAGGGATCCTAAGAATGAG
AAGAAGCAAGGGGTGTGTCCAGGTGGCCCCTAAATTCTGCACAAAGGGTGGGCCTAGGGG
AGCTCAAGGGAGGGCCTGAAGCACTTGTAACTTTGAACCGTCTGTCTGGAGGTCAGAGCC
TGTTGGAAAGCAGGGGGGTAGAGGGGAGCCCCGGAGGCAGGGCTTGTCCGGATGCCTAGG
GGTGGGCAGTGCCAGCCCCTCCTCGCCACTCTTCCCCTTGCAATGGAGGAAAGAGCCAGA
GTGGATATTATTTTTTATTAAATATATTATATGTTAATAAAAAAATCATATCAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-540, + strand, RNAz p=0.998556

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-540, + strand, RNAz p=0.998556

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               80-510, DB345163 THYMU3 Homo sapiens cDNA clone THYMU3010071 3', mRNA 
(dbj|DB345163.1|), blast E-value=0, identity=89.79% 
               

               
               80-511, 86514 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW446617.1|), 
blast E-value=0, identity=91.49% 
               

               
               80-518, 969138 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846623.1|), 
blast E-value=0, identity=91.63% 
               

               
               80-518, BovGen_18861 normal cattle brain Bos taurus cDNA clone (gb|CO890536.1|), 
blast E-value=0, identity=91.63% 
               

               
               85-518, 1480661 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901435.1|), 
blast E-value=0, identity=91.3% 
               

               
               222-518, POSM0605004_F19F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV896557.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               80-510, DB345163 THYMU3 Homo sapiens cDNA clone THYMU3010071 3', mRNA 
(dbj|DB345163.1|), blast E-value=0, identity=89.79% 
               

               
               80-511, 86514 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW446617.1|), 
blast E-value=0, identity=91.49% 
               

               
               80-518, 969138 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb|CK846623.1|), 
blast E-value=0, identity=91.63% 
               

               
               80-518, BovGen_18861 normal cattle brain Bos taurus cDNA clone (gb|CO890536.1|), 
blast E-value=0, identity=91.63% 
               

               
               85-518, 1480661 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901435.1|), 
blast E-value=0, identity=91.3% 
               

               
               222-518, POSM0605004_F19F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV896557.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_181715, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_181715, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-540, gnl|bosTau2|chr23 (2987899-2987361)
               

               
               1-540, gnl|Hg17|chr1 (150733756-150733224)
               

               
               1-540, gnl|Mm7|chr3 (90394337-90394855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr23 (2987899-2987361)
               

               
               1-540, gnl|Hg17|chr1 (150733756-150733224)
               

               
               1-540, gnl|Mm7|chr3 (90394337-90394855)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	80-510, DB345163 THYMU3 Homo sapiens cDNA clone THYMU3010071 3', mRNA (dbj\|DB345163.1\|), blast E-value=0, identity=89.79%
	80-511, 86514 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW446617.1\|), blast E-value=0, identity=91.49%
	80-518, 969138 MARC 4BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK846623.1\|), blast E-value=0, identity=91.63%
	80-518, BovGen_18861 normal cattle brain Bos taurus cDNA clone (gb\|CO890536.1\|), blast E-value=0, identity=91.63%
	85-518, 1480661 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT901435.1\|), blast E-value=0, identity=91.3%
	222-518, POSM0605004_F19F porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV896557.1\|), blast E-value=0, identity=100%

	1-540, gnl\|bosTau2\|chr23 (2987899-2987361)
	1-540, gnl\|Hg17\|chr1 (150733756-150733224)
	1-540, gnl\|Mm7\|chr3 (90394337-90394855)

	cov (0.264306)
	fcc (0.197785)
	ill (0.175593)
	cki (0.165235)
	hyp (0.142837)
	nca (0.136874)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)