Non-Coding RNA Search

Ss1.1-reru26c_i2.5.5

Sequence:


               
               GCCCGGAACGGCGCCCGCAACCGCGGCGGCGTCCAGCGCGTGGAGGGCAAGTTGCGCGCC
AGCGTCGAGAAAGGCGACTATTACGAGGCGCACCAGATGTACCGGACCCTCTTCTTCAGG
TACATGTCGCAGAGCAAGCACGCCGAGGCCCGCGAGCTCATGTGCTCCGGAGCCCTGCTC
TTCTTCAGCCACGGCCAGCAAAACAGCGCCGCCGATTTGTCCATGCTGGTCTTGGAGTCA
CTGGAGAAGGCGGAGGTCGAGGTGGCCGACGAGCTGCTCGAAAGCCTGGCGAAGCTGTTT
AGCTTGATGGATCCCAACTCCCCAGAGCGCGTGGCGTTTGTGTCCCGAGCCCTGAAGTGG
TCCAGCGGAGGATCGGGGAAGCTGGGCCACCCCCGGCTCCACCAGCTGCTGGCCCTCACG
CTGTGGAAAGAACAGAACTACTGTGAGTCCCGGTACCACTTCCTGCACTCCAGCGACGGG
GAAGGCTGCGCCAACATGCTGGTGGAGTACTCCACGTCCCGGGGCTTCCGCAGCGAGGTG
GACATGTTCGTGGCCCAGGCCGTCCTGCAGTTTCTCTGCTTGAAGAACAAGAGCAGCGCG
TCGGTGGTGTTCACGACGTACACGCAGAAGCACCCGTCCATCGAGAACGGCCCCCCGTTC
GTGCAGCCCCTGCTCAACTTCATCTGGTTTCTGCTGTTGGCTCTCGACGGGGGGAAGCTG
GCGGTGTTCACGGTGCTGTGTGAGCAGTACCAGCCGTCGCTGCGGCGGGACCCCATGTAC
AACGAGTACCTCGACCGCATCGGCCAGCTCTTCTTCGGGGTGCCGCCCAAGCAGACGGCT
TCGTACGGAGGCTTGCTAGGGAACCTTCTGAGCAGCCTCATGGGCTCCTCGGAGCAGGAG
GGCGAGGACAGTCAGGACGACAGCAGCCCCATTGAGCTCGATTGACGCCCGCGACCTGCA
CGGAGACGCCCAGACCGCGGCGGGTGTGGTTCCCAACTCGAGTGCAGACCCGGGCCCCGG
CACCCTGGCCGCGGGGCCTCGCGGCGGGTGTCCCGTGGCCGCCGGGGCCGCGGGCTGCGG
GGCCGCGCCGGCTGGGCCGCCGCCGTGTACCTTGCGATGCCCCAATAAAGCGCAGGCCGT
GCCGAGCCGCCACCTCTCCGGGCCTCGTGTCTGGTTTGCTTGGGGAGGCCGGTCCGCGGG
CGGCGGGCGGGCGCCCGGCCCCGCGACGGCGTCTTGGCAGGGAGGCCGCAGACCCGGGCA
CCTTCGTGAGGCAATATTTATTTCCGTGGGTGACCGAGTCCTTACCTGACATTTTAGGTT
TTAACCAAATAACCAGCCCGGGAGCGAGCAGGCCTGTCCTTTCTCCCCGACGCTGCGCCA
GCTGTTCCCGGGAGAGTCACAAAAGGGGAAACACTTTATTTTTTCACGATTAAAATGAGA
CTTGTAGATTAATACCCGCTGATCATGCATGGGGAAGGAGCCGCGTACACAATCTCATTT
ACTGTAAAAATGGAATTTAAAGGAAGGTGTGAGACTTGTTGAGCTTAAATAAATCCTTTC
TACTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGGAACGGCGCCCGCAACCGCGGCGGCGTCCAGCGCGTGGAGGGCAAGTTGCGCGCC
AGCGTCGAGAAAGGCGACTATTACGAGGCGCACCAGATGTACCGGACCCTCTTCTTCAGG
TACATGTCGCAGAGCAAGCACGCCGAGGCCCGCGAGCTCATGTGCTCCGGAGCCCTGCTC
TTCTTCAGCCACGGCCAGCAAAACAGCGCCGCCGATTTGTCCATGCTGGTCTTGGAGTCA
CTGGAGAAGGCGGAGGTCGAGGTGGCCGACGAGCTGCTCGAAAGCCTGGCGAAGCTGTTT
AGCTTGATGGATCCCAACTCCCCAGAGCGCGTGGCGTTTGTGTCCCGAGCCCTGAAGTGG
TCCAGCGGAGGATCGGGGAAGCTGGGCCACCCCCGGCTCCACCAGCTGCTGGCCCTCACG
CTGTGGAAAGAACAGAACTACTGTGAGTCCCGGTACCACTTCCTGCACTCCAGCGACGGG
GAAGGCTGCGCCAACATGCTGGTGGAGTACTCCACGTCCCGGGGCTTCCGCAGCGAGGTG
GACATGTTCGTGGCCCAGGCCGTCCTGCAGTTTCTCTGCTTGAAGAACAAGAGCAGCGCG
TCGGTGGTGTTCACGACGTACACGCAGAAGCACCCGTCCATCGAGAACGGCCCCCCGTTC
GTGCAGCCCCTGCTCAACTTCATCTGGTTTCTGCTGTTGGCTCTCGACGGGGGGAAGCTG
GCGGTGTTCACGGTGCTGTGTGAGCAGTACCAGCCGTCGCTGCGGCGGGACCCCATGTAC
AACGAGTACCTCGACCGCATCGGCCAGCTCTTCTTCGGGGTGCCGCCCAAGCAGACGGCT
TCGTACGGAGGCTTGCTAGGGAACCTTCTGAGCAGCCTCATGGGCTCCTCGGAGCAGGAG
GGCGAGGACAGTCAGGACGACAGCAGCCCCATTGAGCTCGATTGACGCCCGCGACCTGCA
CGGAGACGCCCAGACCGCGGCGGGTGTGGTTCCCAACTCGAGTGCAGACCCGGGCCCCGG
CACCCTGGCCGCGGGGCCTCGCGGCGGGTGTCCCGTGGCCGCCGGGGCCGCGGGCTGCGG
GGCCGCGCCGGCTGGGCCGCCGCCGTGTACCTTGCGATGCCCCAATAAAGCGCAGGCCGT
GCCGAGCCGCCACCTCTCCGGGCCTCGTGTCTGGTTTGCTTGGGGAGGCCGGTCCGCGGG
CGGCGGGCGGGCGCCCGGCCCCGCGACGGCGTCTTGGCAGGGAGGCCGCAGACCCGGGCA
CCTTCGTGAGGCAATATTTATTTCCGTGGGTGACCGAGTCCTTACCTGACATTTTAGGTT
TTAACCAAATAACCAGCCCGGGAGCGAGCAGGCCTGTCCTTTCTCCCCGACGCTGCGCCA
GCTGTTCCCGGGAGAGTCACAAAAGGGGAAACACTTTATTTTTTCACGATTAAAATGAGA
CTTGTAGATTAATACCCGCTGATCATGCATGGGGAAGGAGCCGCGTACACAATCTCATTT
ACTGTAAAAATGGAATTTAAAGGAAGGTGTGAGACTTGTTGAGCTTAAATAAATCCTTTC
TACTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D1H7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D1H7_MOUSE

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               92-198, gnl|bosTau2|chr25 (40176457-40176350)
               

               
               92-198, gnl|Hg17|chr7 (698910-699012)
               

               
               92-198, gnl|Mm7|chr5 (138234571-138234669)
               


               
               405-571, gnl|bosTau2|chr25 (40174084-40173918)
               

               
               405-571, gnl|Hg17|chr7 (703799-703946)
               

               
               405-571, gnl|Mm7|chr5 (138237705-138237877)
               


               
               1202-1567, gnl|bosTau2|chr25 (40167762-40167405)
               

               
               1202-1567, gnl|Hg17|chr7 (708698-709313)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-198, gnl|bosTau2|chr25 (40176457-40176350)
               

               
               92-198, gnl|Hg17|chr7 (698910-699012)
               

               
               92-198, gnl|Mm7|chr5 (138234571-138234669)
               


               
               405-571, gnl|bosTau2|chr25 (40174084-40173918)
               

               
               405-571, gnl|Hg17|chr7 (703799-703946)
               

               
               405-571, gnl|Mm7|chr5 (138237705-138237877)
               


               
               1202-1567, gnl|bosTau2|chr25 (40167762-40167405)
               

               
               1202-1567, gnl|Hg17|chr7 (708698-709313)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cki (0.495704)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               cut (0.339847)
               

               
               bfe (0.299715)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.495704)
               

               
               fcc (0.39557)
               

               
               col (0.390016)
               

               
               cut (0.339847)
               

               
               bfe (0.299715)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	92-198, gnl\|bosTau2\|chr25 (40176457-40176350)
	92-198, gnl\|Hg17\|chr7 (698910-699012)
	92-198, gnl\|Mm7\|chr5 (138234571-138234669)

	405-571, gnl\|bosTau2\|chr25 (40174084-40173918)
	405-571, gnl\|Hg17\|chr7 (703799-703946)
	405-571, gnl\|Mm7\|chr5 (138237705-138237877)

	1202-1567, gnl\|bosTau2\|chr25 (40167762-40167405)
	1202-1567, gnl\|Hg17\|chr7 (708698-709313)

	cki (0.495704)
	fcc (0.39557)
	col (0.390016)
	cut (0.339847)
	bfe (0.299715)
	nms (0.213858)
	mas (0.210305)
	sto (0.179824)
	lnt (0.142308)
	ssp (0.13552)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)