Non-Coding RNA Search

Ss1.1-reru26c_i7.5

Sequence:


               
               CCCCTCCCAACAGACACCCCCAACCCCAGGCCGGCCAGCTCTGCCCTGGCACGGTTAAAA
TACTACCTAGCACAGGCCTCGGGGAGAGGCACCCCCAAACTACCTATGGGCCCAGCCCAG
AGGGCCTCCACTCCCAGGAAGCCCAGACGCGTCCCAACACTGGCAGACACCCAGCACCTC
CCCAATACCGGCAAGGACCTGACTCTCAGTACTACCTACTAGCCCCAAACTACCTATTTT
GCGCTGGCTGGCTCGCCTGCTACCTAGTGCCGAGCCCTCTCCCCTCCCCCCGGCTAGACC
TTTGCTGCTTCCCGCTTGCAGCCTTTGGGGTCCCTGAGGCTGCGCTGAGAAGGCGCTGGG
GTTCGGGGACCAGGGCATTGGCTTCTATTTAAATTGAATAATAATATATTTATTCCAAAG
CATTGTGAGTGCTGCAACCCACAATCCCTCCTTCTCTGGCCTGGGCACACCAAGTTCAGG
CCCATCACCCCCTACTTCCGGAAGGGGCATTCCCAAGCTAGCTGCAGAGCTCTGAGTTTG
CTTCAGGACTGCAGAGATGCTCCCAGCCTCCCTGCCCCTCCCCTGGTCCCTGTGACCTAC
TGTCCAGCCATGGTGAATATGTGCACCCTGACTTTTCCTACAATGGCAAATATTGTATAT
TTGAACAAGATTTTTTTTTTTGTCATTTATATAGTCTTGGAGCTCATTTGTAAGAAATGT
CTTGACTTGGGAAGGATGTGTCAATGGGGTGACTTTGTAGCATGGTGTGTTGTCTAGAGC
TGACTCTGACAGTGGGGGGGGGAGGGCTGCCCTCCCCAATGCTCTTCATCTCCTGTGTTG
TCCTGTGTCCGCCTCATCTCTCTCTGCTCTAGCCTGGGCTTCCAGGAACGGGAAGGTACA
CTTCCTGTCTTGCCCAGTTAACCATGTTTTATGTAACAGAAAAATAAAGATGCTTGATGA
CAAAGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTCCCAACAGACACCCCCAACCCCAGGCCGGCCAGCTCTGCCCTGGCACGGTTAAAA
TACTACCTAGCACAGGCCTCGGGGAGAGGCACCCCCAAACTACCTATGGGCCCAGCCCAG
AGGGCCTCCACTCCCAGGAAGCCCAGACGCGTCCCAACACTGGCAGACACCCAGCACCTC
CCCAATACCGGCAAGGACCTGACTCTCAGTACTACCTACTAGCCCCAAACTACCTATTTT
GCGCTGGCTGGCTCGCCTGCTACCTAGTGCCGAGCCCTCTCCCCTCCCCCCGGCTAGACC
TTTGCTGCTTCCCGCTTGCAGCCTTTGGGGTCCCTGAGGCTGCGCTGAGAAGGCGCTGGG
GTTCGGGGACCAGGGCATTGGCTTCTATTTAAATTGAATAATAATATATTTATTCCAAAG
CATTGTGAGTGCTGCAACCCACAATCCCTCCTTCTCTGGCCTGGGCACACCAAGTTCAGG
CCCATCACCCCCTACTTCCGGAAGGGGCATTCCCAAGCTAGCTGCAGAGCTCTGAGTTTG
CTTCAGGACTGCAGAGATGCTCCCAGCCTCCCTGCCCCTCCCCTGGTCCCTGTGACCTAC
TGTCCAGCCATGGTGAATATGTGCACCCTGACTTTTCCTACAATGGCAAATATTGTATAT
TTGAACAAGATTTTTTTTTTTGTCATTTATATAGTCTTGGAGCTCATTTGTAAGAAATGT
CTTGACTTGGGAAGGATGTGTCAATGGGGTGACTTTGTAGCATGGTGTGTTGTCTAGAGC
TGACTCTGACAGTGGGGGGGGGAGGGCTGCCCTCCCCAATGCTCTTCATCTCCTGTGTTG
TCCTGTGTCCGCCTCATCTCTCTCTGCTCTAGCCTGGGCTTCCAGGAACGGGAAGGTACA
CTTCCTGTCTTGCCCAGTTAACCATGTTTTATGTAACAGAAAAATAAAGATGCTTGATGA
CAAAGAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               45-159, - strand, RNAz p=0.621379
               

               
               419-553, - strand, RNAz p=0.935434
               

               
               707-825, + strand, RNAz p=0.543052

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-159, - strand, RNAz p=0.621379
               

               
               419-553, - strand, RNAz p=0.935434
               

               
               707-825, + strand, RNAz p=0.543052

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-967, gnl|bosTau2|chr4 (37100001-37100986)
               

               
               6-967, gnl|Hg17|chr7 (26967521-26966578)
               

               
               6-967, gnl|Mm7|chr6 (52178829-52177861)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-967, gnl|bosTau2|chr4 (37100001-37100986)
               

               
               6-967, gnl|Hg17|chr7 (26967521-26966578)
               

               
               6-967, gnl|Mm7|chr6 (52178829-52177861)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	45-159, - strand, RNAz p=0.621379
	419-553, - strand, RNAz p=0.935434
	707-825, + strand, RNAz p=0.543052

	6-967, gnl\|bosTau2\|chr4 (37100001-37100986)
	6-967, gnl\|Hg17\|chr7 (26967521-26966578)
	6-967, gnl\|Mm7\|chr6 (52178829-52177861)