Ss1.1-reru26c_j6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCGGTTGGTCTCAGTAGAGTCGTTGCTTTGGTCCGTCTTGGTCGTGTTGCTCTTTGCG CTCGCTCTTCGCATCCCGTCGCTTCGGTTCAGCGCAGGCTACCCGCCCTCTTGCAGGATG GCCCATAAACAGATCTACTACTCCGACAAATACTTTGATGAGCACTACGAGTACCGGCAT GTCATGTTACCCAGAGAACTTTCCAAACAAGTACCCAAAACCCATCTGATGTCTGAAGAG GAGTGGAGGAGACTTGGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCATGAG CCAGAACCACACATTCTTCTCTTTAGACGACCTCTTCCAAAAGATCAACAAAAATGAAGA ACATCTGGGGATCGTCAGTTAAATCTTTGTCAAATTTAATGTATATGTGTATATAAGGTA GTATTCAGTGAATACTTGAAAAATGTACAAATTGTTCATCCATACCTGTGCATGAGCTGT ATTCTTCACAGCAACAGAGCTCAGTTAAATGCAACTACAAGTAGGTTACTGTAAGGTGTT TAAAATTTCTTCTAGTCAGTTTTTTCTTAATATAAGTGCCTGTTTGACTTTACCTGTTGC TTTTGTTAAATAAAGTTTGTATGTTGCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCGGTTGGTCTCAGTAGAGTCGTTGCTTTGGTCCGTCTTGGTCGTGTTGCTCTTTGCG CTCGCTCTTCGCATCCCGTCGCTTCGGTTCAGCGCAGGCTACCCGCCCTCTTGCAGGATG GCCCATAAACAGATCTACTACTCCGACAAATACTTTGATGAGCACTACGAGTACCGGCAT GTCATGTTACCCAGAGAACTTTCCAAACAAGTACCCAAAACCCATCTGATGTCTGAAGAG GAGTGGAGGAGACTTGGTGTCCAACAGAGTCTAGGCTGGGTTCATTACATGATTCATGAG CCAGAACCACACATTCTTCTCTTTAGACGACCTCTTCCAAAAGATCAACAAAAATGAAGA ACATCTGGGGATCGTCAGTTAAATCTTTGTCAAATTTAATGTATATGTGTATATAAGGTA GTATTCAGTGAATACTTGAAAAATGTACAAATTGTTCATCCATACCTGTGCATGAGCTGT ATTCTTCACAGCAACAGAGCTCAGTTAAATGCAACTACAAGTAGGTTACTGTAAGGTGTT TAAAATTTCTTCTAGTCAGTTTTTTCTTAATATAAGTGCCTGTTTGACTTTACCTGTTGC TTTTGTTAAATAAAGTTTGTATGTTGCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 110 entry(ies) | More info |
| Aligned organism(s): 110 entry(ies) | Help | Less info |
| 172-304, gnl|bosTau2|chr3 (9062532-9062664) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473133) | |
| 172-304, gnl|canFam2|chr7 (45473129-45473256) | |
| 172-304, gnl|canFam2|chr7 (45473279-45473120) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473132) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473132) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473132) | |
| 172-304, gnl|canFam2|chr7 (45473129-45473256) | |
| 172-304, gnl|danRer3|chr19 (2547213-2547339) | |
| 172-304, gnl|danRer3|chr19 (2547339-2547214) | |
| 172-304, gnl|danRer3|chr19 (2547213-2547339) | |
| 172-304, gnl|danRer3|chr19 (2547213-2547354) | |
| 172-304, gnl|danRer3|chr19 (2547339-2547214) | |
| 172-304, gnl|danRer3|chr22 (19674226-19674390) | |
| 172-304, gnl|danRer3|chr22 (19674251-19674378) | |
| 172-304, gnl|dasNov1|scaffold_12589 (9303-9465) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45558) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45558-45685) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45558) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45558) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45544) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45558-45685) | |
| 172-304, gnl|echTel1|scaffold_157743 (3301-3139) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273651) | |
| 172-304, gnl|echTel1|scaffold_325382 (273651-273782) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273651) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273651) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273637) | |
| 172-304, gnl|echTel1|scaffold_325382 (273651-273782) | |
| 172-304, gnl|fr1|chrUn (258898114-258897987) | |
| 172-304, gnl|fr1|chrUn (258897988-258898113) | |
| 172-304, gnl|fr1|chrUn (90322168-90322025) | |
| 172-304, gnl|fr1|chrUn (258898114-258897987) | |
| 172-304, gnl|fr1|chrUn (258898114-258897986) | |
| 172-304, gnl|fr1|chrUn (258898114-258897987) | |
| 172-304, gnl|fr1|chrUn (258897986-258898113) | |
| 172-304, gnl|hg17|chr1 (151763513-151763673) | |
| 172-304, gnl|Hg17|chr1 (151763531-151763663) | |
| 172-304, gnl|hg17|chr10 (30026929-30027057) | |
| 172-304, gnl|hg17|chr11 (82598148-82598276) | |
| 172-304, gnl|hg17|chr14 (95759257-95759385) | |
| 172-304, gnl|hg17|chr5 (61843881-61844008) | |
| 172-304, gnl|hg17|chr8 (81719777-81719904) | |
| 172-304, gnl|hg17|chrX (30395287-30395429) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14251) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14251-14378) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14383-14254) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14251) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14251) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14237) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14251-14378) | |
| 172-304, gnl|mm7|chr1 (191545781-191545654) | |
| 172-304, gnl|mm7|chr1 (191545653-191545781) | |
| 172-304, gnl|mm7|chr3 (89543093-89542933) | |
| 172-304, gnl|Mm7|chr3 (89543071-89542939) | |
| 172-304, gnl|mm7|chr8 (83765719-83765847) | |
| 172-304, gnl|mm7|chr8 (83765719-83765847) | |
| 172-304, gnl|mm7|chr8 (83765719-83765861) | |
| 172-304, gnl|mm7|chr8 (83765847-83765720) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041936) | |
| 172-304, gnl|monDom2|scaffold_49 (11041936-11041809) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041936) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041936) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041950) | |
| 172-304, gnl|monDom2|scaffold_49 (11041936-11041809) | |
| 172-304, gnl|monDom2|scaffold_59 (2811808-2811650) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-134) | |
| 172-304, gnl|oryCun1|scaffold_183857 (134-7) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-134) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-134) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-148) | |
| 172-304, gnl|oryCun1|scaffold_183857 (134-7) | |
| 172-304, gnl|oryCun1|scaffold_196054 (1023-861) | |
| 172-304, gnl|panTro1|chr1 (133751535-133751695) | |
| 172-304, gnl|panTro1|chr15 (96223410-96223538) | |
| 172-304, gnl|panTro1|chr7 (83850330-83850457) | |
| 172-304, gnl|panTro1|chr7 (83850458-83850330) | |
| 172-304, gnl|panTro1|chr7 (83850330-83850457) | |
| 172-304, gnl|panTro1|chr9 (84014095-84014223) | |
| 172-304, gnl|panTro1|chrX (31405344-31405486) | |
| 172-304, gnl|rheMac2|chr1 (133521600-133521760) | |
| 172-304, gnl|rheMac2|chr14 (81465786-81465914) | |
| 172-304, gnl|rheMac2|chr17 (30871617-30871490) | |
| 172-304, gnl|rheMac2|chr17 (30871489-30871631) | |
| 172-304, gnl|rheMac2|chr17 (30871617-30871490) | |
| 172-304, gnl|rheMac2|chr18 (4691286-4691158) | |
| 172-304, gnl|rheMac2|chr18 (4691286-4691158) | |
| 172-304, gnl|rn3|chr2 (181563854-181563694) | |
| 172-304, gnl|rn3|chr5 (112242528-112242400) | |
| 172-304, gnl|rn3|chr5 (112242400-112242527) | |
| 172-304, gnl|rn3|chr5 (112242528-112242400) | |
| 172-304, gnl|rn3|chr5 (112242528-112242400) | |
| 172-304, gnl|rn3|chr5 (112242528-112242386) | |
| 172-304, gnl|rn3|chr5 (112242400-112242527) | |
| 172-304, gnl|tetNig1|chr1 (10306855-10306705) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332140) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332140) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332140) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332130) | |
| 172-304, gnl|tetNig1|chr21_random (2332140-2332267) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121987) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121987-121860) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121838-121996) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121987) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121984) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121999) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121987-121860) | |
| 366-577, gnl|bosTau2|chr9 (54119497-54119282) | |
| 366-577, gnl|Hg17|chr9 (89160914-89161109) | |
| 366-577, gnl|Mm7|chr4 (122370738-122370932) |
| Aligned organism(s): 110 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-304, gnl|bosTau2|chr3 (9062532-9062664) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473133) | |
| 172-304, gnl|canFam2|chr7 (45473129-45473256) | |
| 172-304, gnl|canFam2|chr7 (45473279-45473120) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473132) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473132) | |
| 172-304, gnl|canFam2|chr7 (45473257-45473132) | |
| 172-304, gnl|canFam2|chr7 (45473129-45473256) | |
| 172-304, gnl|danRer3|chr19 (2547213-2547339) | |
| 172-304, gnl|danRer3|chr19 (2547339-2547214) | |
| 172-304, gnl|danRer3|chr19 (2547213-2547339) | |
| 172-304, gnl|danRer3|chr19 (2547213-2547354) | |
| 172-304, gnl|danRer3|chr19 (2547339-2547214) | |
| 172-304, gnl|danRer3|chr22 (19674226-19674390) | |
| 172-304, gnl|danRer3|chr22 (19674251-19674378) | |
| 172-304, gnl|dasNov1|scaffold_12589 (9303-9465) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45558) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45558-45685) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45558) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45558) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45686-45544) | |
| 172-304, gnl|dasNov1|scaffold_6701 (45558-45685) | |
| 172-304, gnl|echTel1|scaffold_157743 (3301-3139) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273651) | |
| 172-304, gnl|echTel1|scaffold_325382 (273651-273782) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273651) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273651) | |
| 172-304, gnl|echTel1|scaffold_325382 (273783-273637) | |
| 172-304, gnl|echTel1|scaffold_325382 (273651-273782) | |
| 172-304, gnl|fr1|chrUn (258898114-258897987) | |
| 172-304, gnl|fr1|chrUn (258897988-258898113) | |
| 172-304, gnl|fr1|chrUn (90322168-90322025) | |
| 172-304, gnl|fr1|chrUn (258898114-258897987) | |
| 172-304, gnl|fr1|chrUn (258898114-258897986) | |
| 172-304, gnl|fr1|chrUn (258898114-258897987) | |
| 172-304, gnl|fr1|chrUn (258897986-258898113) | |
| 172-304, gnl|hg17|chr1 (151763513-151763673) | |
| 172-304, gnl|Hg17|chr1 (151763531-151763663) | |
| 172-304, gnl|hg17|chr10 (30026929-30027057) | |
| 172-304, gnl|hg17|chr11 (82598148-82598276) | |
| 172-304, gnl|hg17|chr14 (95759257-95759385) | |
| 172-304, gnl|hg17|chr5 (61843881-61844008) | |
| 172-304, gnl|hg17|chr8 (81719777-81719904) | |
| 172-304, gnl|hg17|chrX (30395287-30395429) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14251) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14251-14378) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14383-14254) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14251) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14251) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14379-14237) | |
| 172-304, gnl|loxAfr1|scaffold_6297 (14251-14378) | |
| 172-304, gnl|mm7|chr1 (191545781-191545654) | |
| 172-304, gnl|mm7|chr1 (191545653-191545781) | |
| 172-304, gnl|mm7|chr3 (89543093-89542933) | |
| 172-304, gnl|Mm7|chr3 (89543071-89542939) | |
| 172-304, gnl|mm7|chr8 (83765719-83765847) | |
| 172-304, gnl|mm7|chr8 (83765719-83765847) | |
| 172-304, gnl|mm7|chr8 (83765719-83765861) | |
| 172-304, gnl|mm7|chr8 (83765847-83765720) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041936) | |
| 172-304, gnl|monDom2|scaffold_49 (11041936-11041809) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041936) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041936) | |
| 172-304, gnl|monDom2|scaffold_49 (11041808-11041950) | |
| 172-304, gnl|monDom2|scaffold_49 (11041936-11041809) | |
| 172-304, gnl|monDom2|scaffold_59 (2811808-2811650) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-134) | |
| 172-304, gnl|oryCun1|scaffold_183857 (134-7) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-134) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-134) | |
| 172-304, gnl|oryCun1|scaffold_183857 (6-148) | |
| 172-304, gnl|oryCun1|scaffold_183857 (134-7) | |
| 172-304, gnl|oryCun1|scaffold_196054 (1023-861) | |
| 172-304, gnl|panTro1|chr1 (133751535-133751695) | |
| 172-304, gnl|panTro1|chr15 (96223410-96223538) | |
| 172-304, gnl|panTro1|chr7 (83850330-83850457) | |
| 172-304, gnl|panTro1|chr7 (83850458-83850330) | |
| 172-304, gnl|panTro1|chr7 (83850330-83850457) | |
| 172-304, gnl|panTro1|chr9 (84014095-84014223) | |
| 172-304, gnl|panTro1|chrX (31405344-31405486) | |
| 172-304, gnl|rheMac2|chr1 (133521600-133521760) | |
| 172-304, gnl|rheMac2|chr14 (81465786-81465914) | |
| 172-304, gnl|rheMac2|chr17 (30871617-30871490) | |
| 172-304, gnl|rheMac2|chr17 (30871489-30871631) | |
| 172-304, gnl|rheMac2|chr17 (30871617-30871490) | |
| 172-304, gnl|rheMac2|chr18 (4691286-4691158) | |
| 172-304, gnl|rheMac2|chr18 (4691286-4691158) | |
| 172-304, gnl|rn3|chr2 (181563854-181563694) | |
| 172-304, gnl|rn3|chr5 (112242528-112242400) | |
| 172-304, gnl|rn3|chr5 (112242400-112242527) | |
| 172-304, gnl|rn3|chr5 (112242528-112242400) | |
| 172-304, gnl|rn3|chr5 (112242528-112242400) | |
| 172-304, gnl|rn3|chr5 (112242528-112242386) | |
| 172-304, gnl|rn3|chr5 (112242400-112242527) | |
| 172-304, gnl|tetNig1|chr1 (10306855-10306705) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332140) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332140) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332140) | |
| 172-304, gnl|tetNig1|chr21_random (2332268-2332130) | |
| 172-304, gnl|tetNig1|chr21_random (2332140-2332267) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121987) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121987-121860) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121838-121996) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121987) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121984) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121859-121999) | |
| 172-304, gnl|xenTro1|scaffold_1128 (121987-121860) | |
| 366-577, gnl|bosTau2|chr9 (54119497-54119282) | |
| 366-577, gnl|Hg17|chr9 (89160914-89161109) | |
| 366-577, gnl|Mm7|chr4 (122370738-122370932) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| fty (0.879198) | |
| tes (0.831255) | |
| thg (0.760746) | |
| rec (0.519211) | |
| csp (0.483559) | |
| cag (0.453583) | |
| ova (0.387397) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| sin (0.349895) | |
| cut (0.339847) | |
| eli (0.303628) | |
| nbm (0.297974) | |
| hlv (0.278513) | |
| ese (0.253004) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| isp (0.150376) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.879198) | |
| tes (0.831255) | |
| thg (0.760746) | |
| rec (0.519211) | |
| csp (0.483559) | |
| cag (0.453583) | |
| ova (0.387397) | |
| nlu (0.383362) | |
| eru (0.360144) | |
| sin (0.349895) | |
| cut (0.339847) | |
| eli (0.303628) | |
| nbm (0.297974) | |
| hlv (0.278513) | |
| ese (0.253004) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| hea (0.204499) | |
| jej (0.197844) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| ton (0.1755) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| isp (0.150376) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ute (0.132784) | |
| kid (0.129735) | |
| sug (0.127291) | |
| eep (0.122564) | |
| med (0.116252) |