Ss1.1-reru26c_j8.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTGGCTGATTCCCGGCATGGACAAAGGGCTGCTGGGGATGTGTGTGGGGGAAAAGCGCAT CATCACCATACCTCCTTTTCTGGCCTATGGAGAAGACGGAGATGGGAAGGACATTCCTGG ACAGGCATCTCTGGTCTTTGATGTCGCATTATTGGACCTCCACAATCCCAAGGATGGCAT TTCCATTGAGAATAAAGTAGTGCCTGAAAACTGTGAGCGGCGAAGTCAAAGCGGGGACTT TCTCAGGTATCATTACAATGGCACACTTCTGGATGGCACATTCTTTGATTCCAGCTACTC GCGGAACCGCACTTTTGACACGTACATTGGGCAGGGCTACGTGATTGCTGGGATGGATGA AGGTTTGCTCGGCGTTTGCATTGGAGAGAAGCGGAGGATCGTGGTCCCCCCTCACCTGGC GTACGGCGAGGAAGGAAGAGGAAACATCCCAGGCTCAGCTGTGCTGGTGTTTGACATCCA CGTGATTGATTTCCACAACCCTTCAGACTCCATCAGCATCACCTCACACTACAAGCCCCC TGACTGCTCCGTGCTGAGTAAGAAGGGCGATTACCTCAAGTACCACTACAATGCCTCGCT TCTGGATGGCACCCTGCTGGATTCCACGTGGAATTTAGGCAAGACGTATAATATTGTTTT GGGATCTGGACAAGTCGTGCTGGGAATGGATATGGGTCTCAGAGAGATGTGCGTTGGGGA GAAACGGACAGTGATCATTCCACCCCACCTGGGCTATGGGGAGGCCGGCGTGGATGGAGA GGTGCCTGGCAGTGCCGTGCTGGCAGAGCATCTCACTGTGGCCAAGATGGAAATGTCATC CTGGCAGTGAGCATACACTAAGTG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTGGCTGATTCCCGGCATGGACAAAGGGCTGCTGGGGATGTGTGTGGGGGAAAAGCGCAT CATCACCATACCTCCTTTTCTGGCCTATGGAGAAGACGGAGATGGGAAGGACATTCCTGG ACAGGCATCTCTGGTCTTTGATGTCGCATTATTGGACCTCCACAATCCCAAGGATGGCAT TTCCATTGAGAATAAAGTAGTGCCTGAAAACTGTGAGCGGCGAAGTCAAAGCGGGGACTT TCTCAGGTATCATTACAATGGCACACTTCTGGATGGCACATTCTTTGATTCCAGCTACTC GCGGAACCGCACTTTTGACACGTACATTGGGCAGGGCTACGTGATTGCTGGGATGGATGA AGGTTTGCTCGGCGTTTGCATTGGAGAGAAGCGGAGGATCGTGGTCCCCCCTCACCTGGC GTACGGCGAGGAAGGAAGAGGAAACATCCCAGGCTCAGCTGTGCTGGTGTTTGACATCCA CGTGATTGATTTCCACAACCCTTCAGACTCCATCAGCATCACCTCACACTACAAGCCCCC TGACTGCTCCGTGCTGAGTAAGAAGGGCGATTACCTCAAGTACCACTACAATGCCTCGCT TCTGGATGGCACCCTGCTGGATTCCACGTGGAATTTAGGCAAGACGTATAATATTGTTTT GGGATCTGGACAAGTCGTGCTGGGAATGGATATGGGTCTCAGAGAGATGTGCGTTGGGGA GAAACGGACAGTGATCATTCCACCCCACCTGGGCTATGGGGAGGCCGGCGTGGATGGAGA GGTGCCTGGCAGTGCCGTGCTGGCAGAGCATCTCACTGTGGCCAAGATGGAAATGTCATC CTGGCAGTGAGCATACACTAAGTG |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 39 entry(ies) | More info |
Aligned organism(s): 39 entry(ies) | Help | Less info |
1-109, gnl|bosTau2|chr4 (34505549-34505657) | |
1-109, gnl|canFam2|chr14 (48003469-48003666) | |
1-109, gnl|danRer3|chr19 (68961142-68960954) | |
1-109, gnl|dasNov1|scaffold_79839 (313-136) | |
1-109, gnl|echTel1|scaffold_73623 (1162-965) | |
1-109, gnl|fr1|chrUn (295292331-295292514) | |
1-109, gnl|galGal2|chr2 (47090239-47090032) | |
1-109, gnl|hg17|chr7 (32789161-32789358) | |
1-109, gnl|Hg17|chr7 (32789248-32789356) | |
1-109, gnl|loxAfr1|scaffold_117179 (819-653) | |
1-109, gnl|mm7|chr6 (56814692-56814884) | |
1-109, gnl|Mm7|chr6 (56814774-56814882) | |
1-109, gnl|monDom2|scaffold_210 (590856-591027) | |
1-109, gnl|oryCun1|scaffold_123429 (4131-4328) | |
1-109, gnl|panTro1|chr6 (33900945-33901142) | |
1-109, gnl|rheMac2|chr3 (93190790-93190593) | |
1-109, gnl|rn3|chr4 (86079573-86079766) | |
1-109, gnl|tetNig1|chr21 (1329232-1329406) | |
1-109, gnl|xenTro1|scaffold_433 (500003-500176) | |
283-435, gnl|bosTau2|chr23 (146370-146218) | |
283-435, gnl|Hg17|chr17 (37229296-37229448) | |
283-435, gnl|Mm7|chr11 (100530970-100531123) | |
439-629, gnl|bosTau2|chr4 (34522745-34522935) | |
439-629, gnl|canFam2|chr14 (48019549-48019754) | |
439-629, gnl|danRer3|chr19 (68955557-68955374) | |
439-629, gnl|dasNov1|scaffold_60812 (1563-1358) | |
439-629, gnl|galGal2|chr2 (47085844-47085639) | |
439-629, gnl|hg17|chr7 (32809002-32809207) | |
439-629, gnl|Hg17|chr7 (32809013-32809203) | |
439-629, gnl|loxAfr1|scaffold_1813 (11909-11704) | |
439-629, gnl|mm7|chr6 (56832078-56832282) | |
439-629, gnl|Mm7|chr6 (56832088-56832278) | |
439-629, gnl|monDom2|scaffold_210 (595087-595295) | |
439-629, gnl|oryCun1|scaffold_182106 (10551-10756) | |
439-629, gnl|panTro1|chr6 (33921225-33921430) | |
439-629, gnl|rheMac2|chr3 (93170311-93170106) | |
439-629, gnl|rn3|chr4 (86098163-86098368) | |
439-629, gnl|tetNig1|chr21 (1330240-1330441) | |
439-629, gnl|xenTro1|scaffold_433 (502006-502209) |
Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-109, gnl|bosTau2|chr4 (34505549-34505657) | |
1-109, gnl|canFam2|chr14 (48003469-48003666) | |
1-109, gnl|danRer3|chr19 (68961142-68960954) | |
1-109, gnl|dasNov1|scaffold_79839 (313-136) | |
1-109, gnl|echTel1|scaffold_73623 (1162-965) | |
1-109, gnl|fr1|chrUn (295292331-295292514) | |
1-109, gnl|galGal2|chr2 (47090239-47090032) | |
1-109, gnl|hg17|chr7 (32789161-32789358) | |
1-109, gnl|Hg17|chr7 (32789248-32789356) | |
1-109, gnl|loxAfr1|scaffold_117179 (819-653) | |
1-109, gnl|mm7|chr6 (56814692-56814884) | |
1-109, gnl|Mm7|chr6 (56814774-56814882) | |
1-109, gnl|monDom2|scaffold_210 (590856-591027) | |
1-109, gnl|oryCun1|scaffold_123429 (4131-4328) | |
1-109, gnl|panTro1|chr6 (33900945-33901142) | |
1-109, gnl|rheMac2|chr3 (93190790-93190593) | |
1-109, gnl|rn3|chr4 (86079573-86079766) | |
1-109, gnl|tetNig1|chr21 (1329232-1329406) | |
1-109, gnl|xenTro1|scaffold_433 (500003-500176) | |
283-435, gnl|bosTau2|chr23 (146370-146218) | |
283-435, gnl|Hg17|chr17 (37229296-37229448) | |
283-435, gnl|Mm7|chr11 (100530970-100531123) | |
439-629, gnl|bosTau2|chr4 (34522745-34522935) | |
439-629, gnl|canFam2|chr14 (48019549-48019754) | |
439-629, gnl|danRer3|chr19 (68955557-68955374) | |
439-629, gnl|dasNov1|scaffold_60812 (1563-1358) | |
439-629, gnl|galGal2|chr2 (47085844-47085639) | |
439-629, gnl|hg17|chr7 (32809002-32809207) | |
439-629, gnl|Hg17|chr7 (32809013-32809203) | |
439-629, gnl|loxAfr1|scaffold_1813 (11909-11704) | |
439-629, gnl|mm7|chr6 (56832078-56832282) | |
439-629, gnl|Mm7|chr6 (56832088-56832278) | |
439-629, gnl|monDom2|scaffold_210 (595087-595295) | |
439-629, gnl|oryCun1|scaffold_182106 (10551-10756) | |
439-629, gnl|panTro1|chr6 (33921225-33921430) | |
439-629, gnl|rheMac2|chr3 (93170311-93170106) | |
439-629, gnl|rn3|chr4 (86098163-86098368) | |
439-629, gnl|tetNig1|chr21 (1330240-1330441) | |
439-629, gnl|xenTro1|scaffold_433 (502006-502209) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nca (0.273748) | |
nlu (0.191681) | |
eru (0.120048) |