Non-Coding RNA Search

Ss1.1-reru26c_k14.5

Sequence:


               
               ACTGTCATGTGGTGTGAAAGATTTCAATGTAGCAATGCTAAAGAGTAACAATTTGGGAAT
AAGGGGCGGGGATATTAAATGGTGAAGATCCAAATGTTGAACCAATTATGTTTTGTTGTT
GTTAGCTGTAAAGTGAACTAGCTGGCTTAATACAGCCAGTTGTCTGGGCAGGCAGAACAT
ACTCTTTCTTACTGTAAATTCTATTTGCTGCTTCCAAAGGTGATGATTTATAAGCAGACA
TATTCTACATGGTCTGTATTTTAGGATCTGGTGCCCAGGCTATATCAGAGCTTATCTAGC
TGGCTCAGCAACCTACCCATCCTGTGGGAAAAGGTAATCCACTGTTTAACAAGGCTCACC
CTCTCTGCCCTGCTCTAGAGACCCTTTGTGAATGTGCTGTAAGATTTTCTTGCTCAATAG
CAAGGTGGTAGCTCTGCTTTCATTTTAAGGAAGTGGAGACTGAGGGCATTGTATCAATAC
TGCTTCAACTCCAAGGATTTTTCCTTGTAAAATTAAAGGGAAGATCTTGTTATAGATTAA
CCATTTTCTTATCCCTTGCTATTGACATATTCATGCTCCTTCTACATCTAGTGGCTAAAA
ATGTTTGCATTTGTTCATTTGACTAATGGTGTCATTTTTTGTTTCTATATTGTTACGCCT
GTAATGTTTTCAAATGTATTTTATTAAATTTGGACTGGATGTATGTCTCTAGCAATACGA
GGTACTTGCTAAACTATTAAGGGAGGGGTGGTAGCCCCATGTTGAGATAAGATAATGGTT
GTTTAAGTTTCAATTTTTTTTTTTTTTTTGGCCTGCAGGGATATTTTGTGTTCATGTGTC
CAAAAAAAGAATAAATTGGCATTCTTGTGCCAAATGTTTTTTTGTGTCAAATGTCTAATA
AATATGGAGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTCATGTGGTGTGAAAGATTTCAATGTAGCAATGCTAAAGAGTAACAATTTGGGAAT
AAGGGGCGGGGATATTAAATGGTGAAGATCCAAATGTTGAACCAATTATGTTTTGTTGTT
GTTAGCTGTAAAGTGAACTAGCTGGCTTAATACAGCCAGTTGTCTGGGCAGGCAGAACAT
ACTCTTTCTTACTGTAAATTCTATTTGCTGCTTCCAAAGGTGATGATTTATAAGCAGACA
TATTCTACATGGTCTGTATTTTAGGATCTGGTGCCCAGGCTATATCAGAGCTTATCTAGC
TGGCTCAGCAACCTACCCATCCTGTGGGAAAAGGTAATCCACTGTTTAACAAGGCTCACC
CTCTCTGCCCTGCTCTAGAGACCCTTTGTGAATGTGCTGTAAGATTTTCTTGCTCAATAG
CAAGGTGGTAGCTCTGCTTTCATTTTAAGGAAGTGGAGACTGAGGGCATTGTATCAATAC
TGCTTCAACTCCAAGGATTTTTCCTTGTAAAATTAAAGGGAAGATCTTGTTATAGATTAA
CCATTTTCTTATCCCTTGCTATTGACATATTCATGCTCCTTCTACATCTAGTGGCTAAAA
ATGTTTGCATTTGTTCATTTGACTAATGGTGTCATTTTTTGTTTCTATATTGTTACGCCT
GTAATGTTTTCAAATGTATTTTATTAAATTTGGACTGGATGTATGTCTCTAGCAATACGA
GGTACTTGCTAAACTATTAAGGGAGGGGTGGTAGCCCCATGTTGAGATAAGATAATGGTT
GTTTAAGTTTCAATTTTTTTTTTTTTTTTGGCCTGCAGGGATATTTTGTGTTCATGTGTC
CAAAAAAAGAATAAATTGGCATTCTTGTGCCAAATGTTTTTTTGTGTCAAATGTCTAATA
AATATGGAGTAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               96-229, - strand, RNAz p=0.991658
               

               
               382-499, + strand, RNAz p=0.621

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-229, - strand, RNAz p=0.991658
               

               
               382-499, + strand, RNAz p=0.621

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-885, gnl|bosTau2|chr3 (77019381-77018501)
               

               
               1-885, gnl|Hg17|chr1 (35991167-35992369)
               

               
               1-885, gnl|Mm7|chr4 (125935053-125934180)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-885, gnl|bosTau2|chr3 (77019381-77018501)
               

               
               1-885, gnl|Hg17|chr1 (35991167-35992369)
               

               
               1-885, gnl|Mm7|chr4 (125935053-125934180)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               eru (0.240096)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	96-229, - strand, RNAz p=0.991658
	382-499, + strand, RNAz p=0.621

	1-885, gnl\|bosTau2\|chr3 (77019381-77018501)
	1-885, gnl\|Hg17\|chr1 (35991167-35992369)
	1-885, gnl\|Mm7\|chr4 (125935053-125934180)

	eru (0.240096)
	fcc (0.197785)
	ton (0.1755)
	fat (0.147427)
	ski (0.146735)
	ssp (0.13552)
	ova (0.129132)
	ebs (0.118301)
	ldo (0.0970026)