Ss1.1-reru26c_m7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGTTCATAGGGGAAGATGGCGGCTGCTCTTTTGGAGGAGTGGGATTGAGACGGGCGGA GGGGGGAGGCCAGGAAGGAGAGACGTTCCCGGCTGTGAAGACCGACATTTCGCTCGCCAG TCATTGGGAGCTCTGCTCAGCCCCGGAGGTGTCCTAGAACGAAAACATCACCATGGCTAC AGAAATTGGTTCTCCTCCTCGTTTTTTCCATATGCCAAGGTTCCAACACCAGGCACCTCG ACAGCTGTTTTATAAGCGACCTGATTTTGCACAGCAACAAGCAATGCAACAGCTTACCTT TGATGGAAAACGAATGAGAAAAGCAGTAAACCGAAAAACCATAGACTATAATCCATCTGT AATTAAGTATTTAGAGAATAGAATATGGCAAAGAGACCAGAGAGATATGAGGGCAATTCA GCCTGATGCAGGTTATTATAATGATCTTGTCCCACCTATAGGGATGTTGAATAATCCTAT GAATGCGGTGACAACAAAGTTTGTTCGAACATCAACCAATAAAGTAAAGTGTCCAGTATT TGTTGTTAGGTGGACTCCAGAAGGAAGACGTTTGGTCACTGGAGCTTCTAGTGGAGAGTT CACTTTGTGGAATGGGCTCACTTTCAATTTTGAAACAATATTACAGGCTCACGATAGCCC AGTGAGGGCCATGACTTGGTCACATAATGATATGTGGATGTTGACAGCAGACCACGGAGG ATATGTGAAATATTGGCAGTCGAACATGAACAACGTCAAGATGTTCCAGGCACATAAGGA GGCGATTAGAGAGGCCAGGTTTATACACAATATACCATTTTCTGTAGTCCCTATTGTCAT GGTTAAATTATTCTCTAAGTGTATTCTGGGTGCAGAGATGCATGGGCTCTGTCAGATTCT GGGAAACTTTCTGCACCCTATAAACACAGTATTTTTCTTTGTTTTCACACATTCACCATT TTGCTGGCACTTTTCTGAAGTAGCGTTGTCCCAATATCAGCCTTTGCAATATGTTAGAGA TGTATTGTCTGCCGCATTTTGCACTGGTTTTCTCTTTTCATTTATGGTTAATAATGTGTA TACGTTATTCCTTTTTATTACCTACTTTGTAAGACAAGAATATTTCATTCCAAATAAAGA ATTCAGTCTTTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGTTCATAGGGGAAGATGGCGGCTGCTCTTTTGGAGGAGTGGGATTGAGACGGGCGGA GGGGGGAGGCCAGGAAGGAGAGACGTTCCCGGCTGTGAAGACCGACATTTCGCTCGCCAG TCATTGGGAGCTCTGCTCAGCCCCGGAGGTGTCCTAGAACGAAAACATCACCATGGCTAC AGAAATTGGTTCTCCTCCTCGTTTTTTCCATATGCCAAGGTTCCAACACCAGGCACCTCG ACAGCTGTTTTATAAGCGACCTGATTTTGCACAGCAACAAGCAATGCAACAGCTTACCTT TGATGGAAAACGAATGAGAAAAGCAGTAAACCGAAAAACCATAGACTATAATCCATCTGT AATTAAGTATTTAGAGAATAGAATATGGCAAAGAGACCAGAGAGATATGAGGGCAATTCA GCCTGATGCAGGTTATTATAATGATCTTGTCCCACCTATAGGGATGTTGAATAATCCTAT GAATGCGGTGACAACAAAGTTTGTTCGAACATCAACCAATAAAGTAAAGTGTCCAGTATT TGTTGTTAGGTGGACTCCAGAAGGAAGACGTTTGGTCACTGGAGCTTCTAGTGGAGAGTT CACTTTGTGGAATGGGCTCACTTTCAATTTTGAAACAATATTACAGGCTCACGATAGCCC AGTGAGGGCCATGACTTGGTCACATAATGATATGTGGATGTTGACAGCAGACCACGGAGG ATATGTGAAATATTGGCAGTCGAACATGAACAACGTCAAGATGTTCCAGGCACATAAGGA GGCGATTAGAGAGGCCAGGTTTATACACAATATACCATTTTCTGTAGTCCCTATTGTCAT GGTTAAATTATTCTCTAAGTGTATTCTGGGTGCAGAGATGCATGGGCTCTGTCAGATTCT GGGAAACTTTCTGCACCCTATAAACACAGTATTTTTCTTTGTTTTCACACATTCACCATT TTGCTGGCACTTTTCTGAAGTAGCGTTGTCCCAATATCAGCCTTTGCAATATGTTAGAGA TGTATTGTCTGCCGCATTTTGCACTGGTTTTCTCTTTTCATTTATGGTTAATAATGTGTA TACGTTATTCCTTTTTATTACCTACTTTGTAAGACAAGAATATTTCATTCCAAATAAAGA ATTCAGTCTTTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
| 1-149, gnl|bosTau2|chr2 (1460368-1460220) | |
| 1-149, gnl|canFam2|chr19 (25805373-25805042) | |
| 1-149, gnl|canFam2|chr19 (25805164-25805302) | |
| 1-149, gnl|dasNov1|scaffold_130181 (1602-1271) | |
| 1-149, gnl|dasNov1|scaffold_130181 (1395-1547) | |
| 1-149, gnl|echTel1|scaffold_191382 (1164-1487) | |
| 1-149, gnl|hg17|chr2 (128284748-128285078) | |
| 1-149, gnl|Hg17|chr2 (128284961-128284816) | |
| 1-149, gnl|hg17|chr7 (849568-849736) | |
| 1-149, gnl|loxAfr1|scaffold_3083 (2731-3059) | |
| 1-149, gnl|loxAfr1|scaffold_3083 (2933-2784) | |
| 1-149, gnl|mm7|chr18 (32196393-32196072) | |
| 1-149, gnl|Mm7|chr18 (32196183-32196332) | |
| 1-149, gnl|monDom2|scaffold_24 (43079853-43079467) | |
| 1-149, gnl|oryCun1|scaffold_165557 (11696-11369) | |
| 1-149, gnl|oryCun1|scaffold_165557 (11491-11659) | |
| 1-149, gnl|panTro1|chr13 (14406834-14407163) | |
| 1-149, gnl|panTro1|chr13 (14407041-14406902) | |
| 1-149, gnl|rn3|chr18 (24246305-24245986) | |
| 1-149, gnl|rn3|chr18 (24246108-24246234) |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-149, gnl|bosTau2|chr2 (1460368-1460220) | |
| 1-149, gnl|canFam2|chr19 (25805373-25805042) | |
| 1-149, gnl|canFam2|chr19 (25805164-25805302) | |
| 1-149, gnl|dasNov1|scaffold_130181 (1602-1271) | |
| 1-149, gnl|dasNov1|scaffold_130181 (1395-1547) | |
| 1-149, gnl|echTel1|scaffold_191382 (1164-1487) | |
| 1-149, gnl|hg17|chr2 (128284748-128285078) | |
| 1-149, gnl|Hg17|chr2 (128284961-128284816) | |
| 1-149, gnl|hg17|chr7 (849568-849736) | |
| 1-149, gnl|loxAfr1|scaffold_3083 (2731-3059) | |
| 1-149, gnl|loxAfr1|scaffold_3083 (2933-2784) | |
| 1-149, gnl|mm7|chr18 (32196393-32196072) | |
| 1-149, gnl|Mm7|chr18 (32196183-32196332) | |
| 1-149, gnl|monDom2|scaffold_24 (43079853-43079467) | |
| 1-149, gnl|oryCun1|scaffold_165557 (11696-11369) | |
| 1-149, gnl|oryCun1|scaffold_165557 (11491-11659) | |
| 1-149, gnl|panTro1|chr13 (14406834-14407163) | |
| 1-149, gnl|panTro1|chr13 (14407041-14406902) | |
| 1-149, gnl|rn3|chr18 (24246305-24245986) | |
| 1-149, gnl|rn3|chr18 (24246108-24246234) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cbl (1.37757) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| eru (0.120048) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (1.37757) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| eye (0.170503) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| eru (0.120048) | |
| ldo (0.0970026) |