Non-Coding RNA Search

Ss1.1-reru28c_c2.5

Sequence:


               
               TAGGAACCCTCTAGGAACTCACCACTGGGGTATCCCTCTTACAGATACTCCTTTTTTATC
CGATCAACCTGTGCACTTTTGATATTTTGATATTATATTTGCTTCCTTAATCCCTGACAT
AGAGATGGTCTCTGATGCCGTACTCTGTCTTGTGGTCCCGTAGTGCTCCAACTTAGCTCC
CAACGGTGTGTTGATCTCACATCAGCACGTGGCACAGACGTGTCCTCCTAGCGTGTAGCT
CCAGACTGTTTAGATGAAGGCTTCAGCCCAGCGAGGAGCCAGGCTAAGTGCATCCACGCT
GTGGTTCAGCAGCCTTTTAGATTCCACGGCATTGTGGTTCATGTTTGAAATTACAGATTT
TAAATGCCATGTTCATTAAGAAATCCAGGGTATTGCGATTCTGGGGTTTTTCATATTGTA
TTATTATTATTCTTAGGAATAGTTCAATGTAACAAGAAGAAAACTTGACCTTTGCTCTGG
TTAAACAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGAACCCTCTAGGAACTCACCACTGGGGTATCCCTCTTACAGATACTCCTTTTTTATC
CGATCAACCTGTGCACTTTTGATATTTTGATATTATATTTGCTTCCTTAATCCCTGACAT
AGAGATGGTCTCTGATGCCGTACTCTGTCTTGTGGTCCCGTAGTGCTCCAACTTAGCTCC
CAACGGTGTGTTGATCTCACATCAGCACGTGGCACAGACGTGTCCTCCTAGCGTGTAGCT
CCAGACTGTTTAGATGAAGGCTTCAGCCCAGCGAGGAGCCAGGCTAAGTGCATCCACGCT
GTGGTTCAGCAGCCTTTTAGATTCCACGGCATTGTGGTTCATGTTTGAAATTACAGATTT
TAAATGCCATGTTCATTAAGAAATCCAGGGTATTGCGATTCTGGGGTTTTTCATATTGTA
TTATTATTATTCTTAGGAATAGTTCAATGTAACAAGAAGAAAACTTGACCTTTGCTCTGG
TTAAACAGTAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-492, gnl|bosTau2|chr8 (45746719-45746240)
               

               
               1-492, gnl|Hg17|chr9 (92555022-92554533)
               

               
               1-492, gnl|Mm7|chr13 (48869135-48869616)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr8 (45746719-45746240)
               

               
               1-492, gnl|Hg17|chr9 (92555022-92554533)
               

               
               1-492, gnl|Mm7|chr13 (48869135-48869616)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)

	1-492, gnl\|bosTau2\|chr8 (45746719-45746240)
	1-492, gnl\|Hg17\|chr9 (92555022-92554533)
	1-492, gnl\|Mm7\|chr13 (48869135-48869616)