Non-Coding RNA Search

Ss1.1-reru28c_e21.5

Sequence:


               
               CCGGGCGCGGCGGCGCCGCCAAGCGGAATAAGAAGCAGCGGCGGAACCGCACCACGTTCA
ACAGCAGCCATCTGCAGGCGCTGGAACGCGTGTTCGAGCGCACGCACTACCCCGACGCCT
TCGTGCGCGAGGAGCTCGCCCGGCGAGTCAACCTCAGCGAGGCGCGCGTCCAGGTCTGGT
TTCAGAACCGCCGGGCCAAGTTCCGCCGGAACGAGCGGGCCATGCTGGCCAACCGCTCCG
CCTCGCTGCTCAAGTCCTACAGCCAGGAGGCTGCCATCGAGCAGCCGGTGGCGCCCCGGC
CCACCACCCTGAGTCCGGATTATCTCTCCTGGACAGCCTCTGCCCCCTACAGCACGGTGC
CACCGTACAGCCCTGGAGGCTCAGGCCCCGCCACCCCAGGGGTCAACATGGCCAACAGCA
TCGCCAGCCTCCGTCTCAAGGCCAAGGAGTTCAGTCTGCATCACAGCCAGGTGCCCACAG
TGAACTGACAGCCGGCTCCACCAGGACCCCGCTGCCTCCCTGGTCTAAGAACAACCAAAC
AGAGGGCAGCCACGCAGGAAAGTGACCTTCCCCTGTCCTCTGTCTCCAGGACAGGCTGGG
TGGGCCTTCCTGGCCCCTCTCTCCAGCTGGGACGCCTGGGCCCAAGAGGCTGCTGAGATG
CCCAGTTTCGGCTCATCCCCTTGTCCACGGCCACTAGAGACTTCAGCCCTTGACCTTGGA
GGGGTTGGGCCAGCAGGTGGAGCAGCAGCTCACCGAGGACTCACTTACTTTGCGTATTAA
AGCCAAAAAGCTGTCGTCTTCAAGAAATAAACATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGCGCGGCGGCGCCGCCAAGCGGAATAAGAAGCAGCGGCGGAACCGCACCACGTTCA
ACAGCAGCCATCTGCAGGCGCTGGAACGCGTGTTCGAGCGCACGCACTACCCCGACGCCT
TCGTGCGCGAGGAGCTCGCCCGGCGAGTCAACCTCAGCGAGGCGCGCGTCCAGGTCTGGT
TTCAGAACCGCCGGGCCAAGTTCCGCCGGAACGAGCGGGCCATGCTGGCCAACCGCTCCG
CCTCGCTGCTCAAGTCCTACAGCCAGGAGGCTGCCATCGAGCAGCCGGTGGCGCCCCGGC
CCACCACCCTGAGTCCGGATTATCTCTCCTGGACAGCCTCTGCCCCCTACAGCACGGTGC
CACCGTACAGCCCTGGAGGCTCAGGCCCCGCCACCCCAGGGGTCAACATGGCCAACAGCA
TCGCCAGCCTCCGTCTCAAGGCCAAGGAGTTCAGTCTGCATCACAGCCAGGTGCCCACAG
TGAACTGACAGCCGGCTCCACCAGGACCCCGCTGCCTCCCTGGTCTAAGAACAACCAAAC
AGAGGGCAGCCACGCAGGAAAGTGACCTTCCCCTGTCCTCTGTCTCCAGGACAGGCTGGG
TGGGCCTTCCTGGCCCCTCTCTCCAGCTGGGACGCCTGGGCCCAAGAGGCTGCTGAGATG
CCCAGTTTCGGCTCATCCCCTTGTCCACGGCCACTAGAGACTTCAGCCCTTGACCTTGGA
GGGGTTGGGCCAGCAGGTGGAGCAGCAGCTCACCGAGGACTCACTTACTTTGCGTATTAA
AGCCAAAAAGCTGTCGTCTTCAAGAAATAAACATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CY80_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CY80_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               498-614, - strand, RNAz p=0.787203
               

               
               653-768, + strand, RNAz p=0.791056

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-614, - strand, RNAz p=0.787203
               

               
               653-768, + strand, RNAz p=0.791056

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016307, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016307, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-175, gnl|bosTau2|chr11 (80297674-80297848)
               

               
               1-175, gnl|Hg17|chr9 (129561079-129561253)
               

               
               1-175, gnl|Mm7|chr2 (30885736-30885904)
               


               
               339-811, gnl|bosTau2|chr11 (80300083-80300562)
               

               
               339-811, gnl|Hg17|chr9 (129564036-129564485)
               

               
               339-811, gnl|Mm7|chr2 (30888093-30888544)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr11 (80297674-80297848)
               

               
               1-175, gnl|Hg17|chr9 (129561079-129561253)
               

               
               1-175, gnl|Mm7|chr2 (30885736-30885904)
               


               
               339-811, gnl|bosTau2|chr11 (80300083-80300562)
               

               
               339-811, gnl|Hg17|chr9 (129564036-129564485)
               

               
               339-811, gnl|Mm7|chr2 (30888093-30888544)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	498-614, - strand, RNAz p=0.787203
	653-768, + strand, RNAz p=0.791056

	1-175, gnl\|bosTau2\|chr11 (80297674-80297848)
	1-175, gnl\|Hg17\|chr9 (129561079-129561253)
	1-175, gnl\|Mm7\|chr2 (30885736-30885904)

	339-811, gnl\|bosTau2\|chr11 (80300083-80300562)
	339-811, gnl\|Hg17\|chr9 (129564036-129564485)
	339-811, gnl\|Mm7\|chr2 (30888093-30888544)