Non-Coding RNA Search

Ss1.1-reru28c_l19.5

Sequence:


               
               CAGGAGAATGTCAAAGACAAGCTTCGGGCCATTGTGGTGACCCTGTCCTATAGTCTCCAG
ACCCCTCGGCTCCGGAGACAGGCTCCGGGGCAGGGACTGCCCCCAGTGGCCCCCATCCTG
AATGCCCATCAGCCCAGCACCCAGCGGACAGAGATCCACTTCCTGAAGCAAGGCTGTGGT
GAAGACAAGATCTGCCAGAGTAATCTGCAGCTGGTCCACGCCCGTTTCTGTGCCCGCGTC
AGCGACACGGAGTTTCAGCCTCTGCCCATGGATGCGGATGGGACGACAGCCCTGTTCGCG
CTGAGTGGGCAGCCAGTCATCGGCCTGGAGCTGAAGGTCACCAATCTGCCCTCGAACCCA
GCCCAGCCACAGGCTGACGGGGATGACGCCCACGAAGCCCAGCTCCTGGTCACCCTCCCC
GCCTCTCTGCACTACTCAGGAGTCCGGGCCCTGGACTCTGCGGAGAAGCCGCTGTGCCTG
TCCAATGAGAATGCCTCCCACGTCGAGTGTGAGCTGGGGAACCCCATGAAGAGGGGTGCC
CAGGTCACTTTCTACCTCATCCTTAGCACCTCGGGGATCACCATTGAGACCACGGAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGAATGTCAAAGACAAGCTTCGGGCCATTGTGGTGACCCTGTCCTATAGTCTCCAG
ACCCCTCGGCTCCGGAGACAGGCTCCGGGGCAGGGACTGCCCCCAGTGGCCCCCATCCTG
AATGCCCATCAGCCCAGCACCCAGCGGACAGAGATCCACTTCCTGAAGCAAGGCTGTGGT
GAAGACAAGATCTGCCAGAGTAATCTGCAGCTGGTCCACGCCCGTTTCTGTGCCCGCGTC
AGCGACACGGAGTTTCAGCCTCTGCCCATGGATGCGGATGGGACGACAGCCCTGTTCGCG
CTGAGTGGGCAGCCAGTCATCGGCCTGGAGCTGAAGGTCACCAATCTGCCCTCGAACCCA
GCCCAGCCACAGGCTGACGGGGATGACGCCCACGAAGCCCAGCTCCTGGTCACCCTCCCC
GCCTCTCTGCACTACTCAGGAGTCCGGGCCCTGGACTCTGCGGAGAAGCCGCTGTGCCTG
TCCAATGAGAATGCCTCCCACGTCGAGTGTGAGCTGGGGAACCCCATGAAGAGGGGTGCC
CAGGTCACTTTCTACCTCATCCTTAGCACCTCGGGGATCACCATTGAGACCACGGAGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, - strand, RNAz p=0.892118

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.892118

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-153, gnl|bosTau2|chr5 (35358516-35358364)
               

               
               1-153, gnl|Hg17|chr12 (54376486-54376334)
               

               
               1-153, gnl|Mm7|chr10 (128447171-128447322)
               


               
               267-466, gnl|bosTau2|chr5 (35356193-35355994)
               

               
               267-466, gnl|Hg17|chr12 (54375024-54374825)
               

               
               267-466, gnl|Mm7|chr10 (128448564-128448763)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr5 (35358516-35358364)
               

               
               1-153, gnl|Hg17|chr12 (54376486-54376334)
               

               
               1-153, gnl|Mm7|chr10 (128447171-128447322)
               


               
               267-466, gnl|bosTau2|chr5 (35356193-35355994)
               

               
               267-466, gnl|Hg17|chr12 (54375024-54374825)
               

               
               267-466, gnl|Mm7|chr10 (128448564-128448763)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-153, gnl\|bosTau2\|chr5 (35358516-35358364)
	1-153, gnl\|Hg17\|chr12 (54376486-54376334)
	1-153, gnl\|Mm7\|chr10 (128447171-128447322)

	267-466, gnl\|bosTau2\|chr5 (35356193-35355994)
	267-466, gnl\|Hg17\|chr12 (54375024-54374825)
	267-466, gnl\|Mm7\|chr10 (128448564-128448763)