Ss1.1-reru29c_a24.5
|
GCTTCACACAGACAAGATGATGCGGACGGCCGCCAAGGATGTGCACAGGCTTCGAGGCCA
GAGCTGTAAGGAGCCCCCAGAAGTGCAGTCTTTCAGGGAGAAGATGGCGTTTTTCACCCG
GCCTCGGATGAATATCCCAACCCTCTCTGCAGACGATGTTTAAATCGCCAGAAAAGTATT
TCCTTTGTTCCCTTGAATACGCTGTGAACCTAGACTGTGGCTAAAGTTATTTAAGTGGTG
TTATATGAAGGTACTGAGTCACAAGTCCGCTAGTACTCTCGATGGTTTGAAGACACACAG
ATTTTTTTTTTTGACGTCCTACCGATGTCACAGCACAGCTGACCTTTCTTACTTAACATA
TTTTGTACTATATTAAAACAAAACAAAACAAAAATGCACGAGACCTGTTTGAGGGATTCT
GGGGTGCGCCCAGGAATCTTCACGGGCTGTGATGTGTTGCTGCTCTTCTTAAAATTGTTT
AGACTTTTTTTTTTTTTTTTTTTTTTTTTTGTACAGCTCTACCTTCTAGAGGTTTCACTG
CAATAAGAAGTAATGTTCGAGGGACGATAATCCTCAAAGGACGTCCTACCGATGTCACAG
CACAGCTGACCTTTCTTACTTAACATATTTTGTACTATATTAAAACAAAACAAAACAAAA
AAATGCACGAGACCTGTTTGAGGGATTCTGGGGTGCGCCCAGGAATCTCTCACGGGCTGT
GATGTGTTTTTGTGGGGCCGCCTGACGAGGAGTGGGCAGCGGGGCAGCCTGCCCATGCTG
GTCTCAGATGCCCAGTGAAGCCGCTGTAGCGAGTGAGGGAGGGCTGTGGAGAACTCCTTT
CTGTTTGATCTCCGTCAATAAAGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTTCACACAGACAAGATGATGCGGACGGCCGCCAAGGATGTGCACAGGCTTCGAGGCCA
GAGCTGTAAGGAGCCCCCAGAAGTGCAGTCTTTCAGGGAGAAGATGGCGTTTTTCACCCG
GCCTCGGATGAATATCCCAACCCTCTCTGCAGACGATGTTTAAATCGCCAGAAAAGTATT
TCCTTTGTTCCCTTGAATACGCTGTGAACCTAGACTGTGGCTAAAGTTATTTAAGTGGTG
TTATATGAAGGTACTGAGTCACAAGTCCGCTAGTACTCTCGATGGTTTGAAGACACACAG
ATTTTTTTTTTTGACGTCCTACCGATGTCACAGCACAGCTGACCTTTCTTACTTAACATA
TTTTGTACTATATTAAAACAAAACAAAACAAAAATGCACGAGACCTGTTTGAGGGATTCT
GGGGTGCGCCCAGGAATCTTCACGGGCTGTGATGTGTTGCTGCTCTTCTTAAAATTGTTT
AGACTTTTTTTTTTTTTTTTTTTTTTTTTTGTACAGCTCTACCTTCTAGAGGTTTCACTG
CAATAAGAAGTAATGTTCGAGGGACGATAATCCTCAAAGGACGTCCTACCGATGTCACAG
CACAGCTGACCTTTCTTACTTAACATATTTTGTACTATATTAAAACAAAACAAAACAAAA
AAATGCACGAGACCTGTTTGAGGGATTCTGGGGTGCGCCCAGGAATCTCTCACGGGCTGT
GATGTGTTTTTGTGGGGCCGCCTGACGAGGAGTGGGCAGCGGGGCAGCCTGCCCATGCTG
GTCTCAGATGCCCAGTGAAGCCGCTGTAGCGAGTGAGGGAGGGCTGTGGAGAACTCCTTT
CTGTTTGATCTCCGTCAATAAAGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
91-321, gnl|bosTau2|chr7 (53100726-53100497) |
|
91-321, gnl|canFam2|chr4 (46478731-46478514) |
|
91-321, gnl|dasNov1|scaffold_1618 (27910-27698) |
|
91-321, gnl|hg17|chr3 (147153893-147154113) |
|
91-321, gnl|Hg17|chr5 (167828528-167828756) |
|
91-321, gnl|loxAfr1|scaffold_125969 (4353-4566) |
|
91-321, gnl|mm7|chr11 (35692962-35692742) |
|
91-321, gnl|Mm7|chr11 (35692964-35692719) |
|
91-321, gnl|monDom2|scaffold_6 (33626128-33625899) |
|
91-321, gnl|oryCun1|scaffold_211793 (44344-44560) |
|
91-321, gnl|panTro1|chr2 (149935407-149935627) |
|
91-321, gnl|rheMac2|chr2 (141831503-141831284) |
|
91-321, gnl|rn3|chr10 (20752410-20752191) |
| |
|
456-864, gnl|bosTau2|chr7 (53100372-53099976) |
|
456-864, gnl|Hg17|chr5 (167828911-167829326) |
|
456-864, gnl|Mm7|chr11 (35692562-35692129) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
91-321, gnl|bosTau2|chr7 (53100726-53100497) |
|
91-321, gnl|canFam2|chr4 (46478731-46478514) |
|
91-321, gnl|dasNov1|scaffold_1618 (27910-27698) |
|
91-321, gnl|hg17|chr3 (147153893-147154113) |
|
91-321, gnl|Hg17|chr5 (167828528-167828756) |
|
91-321, gnl|loxAfr1|scaffold_125969 (4353-4566) |
|
91-321, gnl|mm7|chr11 (35692962-35692742) |
|
91-321, gnl|Mm7|chr11 (35692964-35692719) |
|
91-321, gnl|monDom2|scaffold_6 (33626128-33625899) |
|
91-321, gnl|oryCun1|scaffold_211793 (44344-44560) |
|
91-321, gnl|panTro1|chr2 (149935407-149935627) |
|
91-321, gnl|rheMac2|chr2 (141831503-141831284) |
|
91-321, gnl|rn3|chr10 (20752410-20752191) |
| |
|
456-864, gnl|bosTau2|chr7 (53100372-53099976) |
|
456-864, gnl|Hg17|chr5 (167828911-167829326) |
|
456-864, gnl|Mm7|chr11 (35692562-35692129) |
|
mcp (0.170648) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
eru (0.120048) |
|
mcp (0.170648) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
eru (0.120048) |
