Ss1.1-reru29c_c3.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GAGAAATGCCATCTGAAGAAGGAACCTTAAATGGTCTGCTTCTCCATTTAAGCCTGTTAT GGATACAAATTACTATTACTCAGCTGTGGAAAGAAATAACTTGATGAGGTTATCCCAGAG CATTCCATTTACACCTGTGCCTCCAAGAGGTGAGCCTGTCACAGTGTATCGCTTGGAGGA GAGTTCTCCCAACATACTGAATAACAGCATGTCTTCTTGGTCACAGCTAGGCCTTTGTGC CAAAATAGAGTTTTTAAGTAAAGAGGAGATGGGAGGAGGTTTACGAAGAGCTGTCAAAGT ACAGTGTACTTGGTCAGAGCATGATATCCTCAAATCAGGACATCTTTATATCATCAAATC TTTTCTTCCTGAGGTGGTTAACACATGGTCAAGTATTTATAAAGAAGATACAGTTCTGCA TCTCTGTCTCAGAGAAATTCAACAACAGAGAGCAGCACAAAAGCTTACATTTGCCTTCAA CCAAATGAAACCCAAATCCATACCATATTCTCCAAGGTTCCTTGAAGTTTTCCTGCTATA TTGCCACTCAGCAGGACAGTGGTTTGCTGTGGAAGAATGTATGACTGGAGAATTTAGGAA ATACAACAACAATAATGGTGATGAGATTATTCCAACTAATACACTGGAAGAGATCATGCT AGCCTTTAGCCACTGGACTTATGAATATACAAGAGGAGAGTTACTGGTACTTGATTTACA AGGCGTGGGTGAAAATTTGACTGATCCTTCTGTGATAAAGGCAGAAGAAAAGAGATCCTG TGATATGGTTTTTGGCCCAGCAAATCTAGGAGAAGATGCAATAAAAAACTTCAGAGCAAA ACATCATTGTAATTCTTGCTGTAGAAAGCTTAAACTTCCAGATCTGAAGAGGAATGACTA TACACCTGATAAAGTTATATTTCC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GAGAAATGCCATCTGAAGAAGGAACCTTAAATGGTCTGCTTCTCCATTTAAGCCTGTTAT GGATACAAATTACTATTACTCAGCTGTGGAAAGAAATAACTTGATGAGGTTATCCCAGAG CATTCCATTTACACCTGTGCCTCCAAGAGGTGAGCCTGTCACAGTGTATCGCTTGGAGGA GAGTTCTCCCAACATACTGAATAACAGCATGTCTTCTTGGTCACAGCTAGGCCTTTGTGC CAAAATAGAGTTTTTAAGTAAAGAGGAGATGGGAGGAGGTTTACGAAGAGCTGTCAAAGT ACAGTGTACTTGGTCAGAGCATGATATCCTCAAATCAGGACATCTTTATATCATCAAATC TTTTCTTCCTGAGGTGGTTAACACATGGTCAAGTATTTATAAAGAAGATACAGTTCTGCA TCTCTGTCTCAGAGAAATTCAACAACAGAGAGCAGCACAAAAGCTTACATTTGCCTTCAA CCAAATGAAACCCAAATCCATACCATATTCTCCAAGGTTCCTTGAAGTTTTCCTGCTATA TTGCCACTCAGCAGGACAGTGGTTTGCTGTGGAAGAATGTATGACTGGAGAATTTAGGAA ATACAACAACAATAATGGTGATGAGATTATTCCAACTAATACACTGGAAGAGATCATGCT AGCCTTTAGCCACTGGACTTATGAATATACAAGAGGAGAGTTACTGGTACTTGATTTACA AGGCGTGGGTGAAAATTTGACTGATCCTTCTGTGATAAAGGCAGAAGAAAAGAGATCCTG TGATATGGTTTTTGGCCCAGCAAATCTAGGAGAAGATGCAATAAAAAACTTCAGAGCAAA ACATCATTGTAATTCTTGCTGTAGAAAGCTTAAACTTCCAGATCTGAAGAGGAATGACTA TACACCTGATAAAGTTATATTTCC |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | More info |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
187-306, - strand, RNAz p=0.759319 | |
320-437, - strand, RNAz p=0.621351 | |
508-625, + strand, RNAz p=0.667198 |
Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
187-306, - strand, RNAz p=0.759319 | |
320-437, - strand, RNAz p=0.621351 | |
508-625, + strand, RNAz p=0.667198 |
Aligned organism(s): 57 entry(ies) | More info |
Aligned organism(s): 57 entry(ies) | Help | Less info |
148-437, gnl|bosTau2|chr3 (16050799-16051088) | |
148-437, gnl|canFam2|chr30 (19472023-19472352) | |
148-437, gnl|danRer3|chr7 (20488791-20489081) | |
148-437, gnl|dasNov1|scaffold_17478 (3757-3428) | |
148-437, gnl|echTel1|scaffold_285170 (8172-7844) | |
148-437, gnl|fr1|chrUn (145168175-145167863) | |
148-437, gnl|galGal2|chr10 (11415561-11415236) | |
148-437, gnl|hg17|chr15 (48654337-48654666) | |
148-437, gnl|Hg17|chr15 (48654626-48654337) | |
148-437, gnl|loxAfr1|scaffold_29079 (35009-34681) | |
148-437, gnl|mm7|chr2 (126538511-126538838) | |
148-437, gnl|Mm7|chr2 (126538800-126538511) | |
148-437, gnl|monDom2|scaffold_12 (17905535-17905204) | |
148-437, gnl|oryCun1|scaffold_81535 (9131-9460) | |
148-437, gnl|panTro1|chr16 (48679339-48679668) | |
148-437, gnl|rheMac2|chr7 (28892271-28892600) | |
148-437, gnl|rn3|chr3 (114232493-114232820) | |
148-437, gnl|tetNig1|chrUn_random (6182018-6182309) | |
148-437, gnl|xenTro1|scaffold_613 (701398-701701) | |
508-723, gnl|bosTau2|chr3 (16051433-16051649) | |
508-723, gnl|canFam2|chr30 (19471456-19471675) | |
508-723, gnl|danRer3|chr7 (20488026-20488237) | |
508-723, gnl|dasNov1|scaffold_17478 (4329-4110) | |
508-723, gnl|echTel1|scaffold_285170 (8727-8508) | |
508-723, gnl|fr1|chrUn (145168820-145168598) | |
508-723, gnl|galGal2|chr10 (11416432-11416213) | |
508-723, gnl|hg17|chr15 (48653760-48653979) | |
508-723, gnl|Hg17|chr15 (48653978-48653762) | |
508-723, gnl|loxAfr1|scaffold_29079 (36239-36020) | |
508-723, gnl|mm7|chr2 (126537961-126538180) | |
508-723, gnl|Mm7|chr2 (126538179-126537963) | |
508-723, gnl|monDom2|scaffold_12 (17906184-17905965) | |
508-723, gnl|oryCun1|scaffold_81535 (8563-8782) | |
508-723, gnl|panTro1|chr16 (48678763-48678982) | |
508-723, gnl|rheMac2|chr7 (28891694-28891913) | |
508-723, gnl|rn3|chr3 (114231969-114232188) | |
508-723, gnl|tetNig1|chrUn_random (6181519-6181737) | |
508-723, gnl|xenTro1|scaffold_613 (699797-700016) | |
773-881, gnl|bosTau2|chr3 (16054241-16054349) | |
773-881, gnl|canFam2|chr30 (19467403-19467526) | |
773-881, gnl|danRer3|chr7 (20485601-20485720) | |
773-881, gnl|dasNov1|scaffold_17478 (7918-7701) | |
773-881, gnl|echTel1|scaffold_285170 (10065-9942) | |
773-881, gnl|fr1|chrUn (145169171-145169046) | |
773-881, gnl|galGal2|chr10 (11417331-11417214) | |
773-881, gnl|hg17|chr15 (48649365-48649490) | |
773-881, gnl|Hg17|chr15 (48649484-48649376) | |
773-881, gnl|loxAfr1|scaffold_16757 (8638-8764) | |
773-881, gnl|mm7|chr2 (126536074-126536199) | |
773-881, gnl|Mm7|chr2 (126536193-126536085) | |
773-881, gnl|monDom2|scaffold_12 (17909003-17908878) | |
773-881, gnl|oryCun1|scaffold_81535 (5192-5314) | |
773-881, gnl|panTro1|chr16 (48673637-48673762) | |
773-881, gnl|rheMac2|chr7 (28890014-28890139) | |
773-881, gnl|rn3|chr3 (114230120-114230245) | |
773-881, gnl|tetNig1|chrUn_random (6181132-6181257) | |
773-881, gnl|xenTro1|scaffold_613 (696956-697081) |
Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
148-437, gnl|bosTau2|chr3 (16050799-16051088) | |
148-437, gnl|canFam2|chr30 (19472023-19472352) | |
148-437, gnl|danRer3|chr7 (20488791-20489081) | |
148-437, gnl|dasNov1|scaffold_17478 (3757-3428) | |
148-437, gnl|echTel1|scaffold_285170 (8172-7844) | |
148-437, gnl|fr1|chrUn (145168175-145167863) | |
148-437, gnl|galGal2|chr10 (11415561-11415236) | |
148-437, gnl|hg17|chr15 (48654337-48654666) | |
148-437, gnl|Hg17|chr15 (48654626-48654337) | |
148-437, gnl|loxAfr1|scaffold_29079 (35009-34681) | |
148-437, gnl|mm7|chr2 (126538511-126538838) | |
148-437, gnl|Mm7|chr2 (126538800-126538511) | |
148-437, gnl|monDom2|scaffold_12 (17905535-17905204) | |
148-437, gnl|oryCun1|scaffold_81535 (9131-9460) | |
148-437, gnl|panTro1|chr16 (48679339-48679668) | |
148-437, gnl|rheMac2|chr7 (28892271-28892600) | |
148-437, gnl|rn3|chr3 (114232493-114232820) | |
148-437, gnl|tetNig1|chrUn_random (6182018-6182309) | |
148-437, gnl|xenTro1|scaffold_613 (701398-701701) | |
508-723, gnl|bosTau2|chr3 (16051433-16051649) | |
508-723, gnl|canFam2|chr30 (19471456-19471675) | |
508-723, gnl|danRer3|chr7 (20488026-20488237) | |
508-723, gnl|dasNov1|scaffold_17478 (4329-4110) | |
508-723, gnl|echTel1|scaffold_285170 (8727-8508) | |
508-723, gnl|fr1|chrUn (145168820-145168598) | |
508-723, gnl|galGal2|chr10 (11416432-11416213) | |
508-723, gnl|hg17|chr15 (48653760-48653979) | |
508-723, gnl|Hg17|chr15 (48653978-48653762) | |
508-723, gnl|loxAfr1|scaffold_29079 (36239-36020) | |
508-723, gnl|mm7|chr2 (126537961-126538180) | |
508-723, gnl|Mm7|chr2 (126538179-126537963) | |
508-723, gnl|monDom2|scaffold_12 (17906184-17905965) | |
508-723, gnl|oryCun1|scaffold_81535 (8563-8782) | |
508-723, gnl|panTro1|chr16 (48678763-48678982) | |
508-723, gnl|rheMac2|chr7 (28891694-28891913) | |
508-723, gnl|rn3|chr3 (114231969-114232188) | |
508-723, gnl|tetNig1|chrUn_random (6181519-6181737) | |
508-723, gnl|xenTro1|scaffold_613 (699797-700016) | |
773-881, gnl|bosTau2|chr3 (16054241-16054349) | |
773-881, gnl|canFam2|chr30 (19467403-19467526) | |
773-881, gnl|danRer3|chr7 (20485601-20485720) | |
773-881, gnl|dasNov1|scaffold_17478 (7918-7701) | |
773-881, gnl|echTel1|scaffold_285170 (10065-9942) | |
773-881, gnl|fr1|chrUn (145169171-145169046) | |
773-881, gnl|galGal2|chr10 (11417331-11417214) | |
773-881, gnl|hg17|chr15 (48649365-48649490) | |
773-881, gnl|Hg17|chr15 (48649484-48649376) | |
773-881, gnl|loxAfr1|scaffold_16757 (8638-8764) | |
773-881, gnl|mm7|chr2 (126536074-126536199) | |
773-881, gnl|Mm7|chr2 (126536193-126536085) | |
773-881, gnl|monDom2|scaffold_12 (17909003-17908878) | |
773-881, gnl|oryCun1|scaffold_81535 (5192-5314) | |
773-881, gnl|panTro1|chr16 (48673637-48673762) | |
773-881, gnl|rheMac2|chr7 (28890014-28890139) | |
773-881, gnl|rn3|chr3 (114230120-114230245) | |
773-881, gnl|tetNig1|chrUn_random (6181132-6181257) | |
773-881, gnl|xenTro1|scaffold_613 (696956-697081) |
Expressed library(ies): 2 entry(ies) | More info |
Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ssp (0.13552) | |
eru (0.120048) |