Non-Coding RNA Search

Ss1.1-reru29c_g20.5

Sequence:


               
               ACGGGGGGTTAAGGGAGCCTGTGGCCTCGATGGAGAGAAGGGAGATAAGGGAGAAGCTGG
TCCCCCGGGCCGCCCAGGGCTAGCAGGACGCAAAGGAGAGTTGGGGGAGCCAGGTATTCC
AGGCCCGTCAGGAGCCCCTGGAAAGGAGGGCCTGATCGGCCCCAAGGTGACCGAGGCTTT
GATGGGCAGCCAGGACCCAAGGGTGACCAGGGTGAGAAAGGGGAACGGGGGCCCCCAGGA
ACTGGGGGCTTCCCAGGTCCCAGAGGCAGTGATGGCTCTAGCGGGCCCCCTGGGCCACCT
GGCAGTGTTGGTCCCAAAGGCCCTGAAGGACTTCAGGGCCAGAAGGGTGAGCGAGGTCCC
CCTGGAGAGAGTGTGGTGGGGGCCCCTGGGGCCCCTGGAACCCCTGGAGAAAGAGGGGAG
CAGGGGCGGCCAGGCCCTGCAGGGCCCCGTGGTGAGAAAGGAGAAGCTGCGCTGACTGAG
GATGACATCCGGGGACTTGTGCGTCAGGAGATGAGTCAGCATTGCGCCTGCCAGGGTCAG
TTTATTGCATCTGGATCACGACCCCTTCCGAGTTACGCTGCAGACACTGCTGGCCCCCAG
CTCCACCGCGTGCCCGTGCTGCGTGTCTCTCATGCAGAGGAGGAAGGCCAGGTGCCCCCC
GAGGACGACGAGTATGAATACTCATAGTACTCCGTGGAGGAATACCATAACCCTGAGGCT
CCCTGGGATGGCGATGCCCCAGATCCCTGCTCACTTCCACTGGATGAGGGCTCCTGTACT
GCCTACACCCTGCGCTGGTATCATCGGGCTGTGGCAGGTGGCACGGTGGCCTGTCATCCC
TTTGTCTATGGTGGCTGTGGAGGGAATGCCAACCGTTTTGAGACCCGTGAGGCCTGTGAG
ATCCGCTGCCCACCCCGGATGGCCCATATCCAGGGGACAGGTGCTGCCCGGAGTTGAGGC
CAGATGATGTGCTGAATGAGTCGGTGTCTCCATTGGGCCCTGCTGTCCCTCCCCTTGGTG
CTAGAGGCCTGTGTGCCCGTGAGCGTGCATGATCGTGTCCGTTATTTCAGTGACTTGTTC
CGTGGGTCTAGCCTTCCCCCCTCTGGACAAACCCCCATTGTGGCTCCTGCCTCCCTGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGGGGTTAAGGGAGCCTGTGGCCTCGATGGAGAGAAGGGAGATAAGGGAGAAGCTGG
TCCCCCGGGCCGCCCAGGGCTAGCAGGACGCAAAGGAGAGTTGGGGGAGCCAGGTATTCC
AGGCCCGTCAGGAGCCCCTGGAAAGGAGGGCCTGATCGGCCCCAAGGTGACCGAGGCTTT
GATGGGCAGCCAGGACCCAAGGGTGACCAGGGTGAGAAAGGGGAACGGGGGCCCCCAGGA
ACTGGGGGCTTCCCAGGTCCCAGAGGCAGTGATGGCTCTAGCGGGCCCCCTGGGCCACCT
GGCAGTGTTGGTCCCAAAGGCCCTGAAGGACTTCAGGGCCAGAAGGGTGAGCGAGGTCCC
CCTGGAGAGAGTGTGGTGGGGGCCCCTGGGGCCCCTGGAACCCCTGGAGAAAGAGGGGAG
CAGGGGCGGCCAGGCCCTGCAGGGCCCCGTGGTGAGAAAGGAGAAGCTGCGCTGACTGAG
GATGACATCCGGGGACTTGTGCGTCAGGAGATGAGTCAGCATTGCGCCTGCCAGGGTCAG
TTTATTGCATCTGGATCACGACCCCTTCCGAGTTACGCTGCAGACACTGCTGGCCCCCAG
CTCCACCGCGTGCCCGTGCTGCGTGTCTCTCATGCAGAGGAGGAAGGCCAGGTGCCCCCC
GAGGACGACGAGTATGAATACTCATAGTACTCCGTGGAGGAATACCATAACCCTGAGGCT
CCCTGGGATGGCGATGCCCCAGATCCCTGCTCACTTCCACTGGATGAGGGCTCCTGTACT
GCCTACACCCTGCGCTGGTATCATCGGGCTGTGGCAGGTGGCACGGTGGCCTGTCATCCC
TTTGTCTATGGTGGCTGTGGAGGGAATGCCAACCGTTTTGAGACCCGTGAGGCCTGTGAG
ATCCGCTGCCCACCCCGGATGGCCCATATCCAGGGGACAGGTGCTGCCCGGAGTTGAGGC
CAGATGATGTGCTGAATGAGTCGGTGTCTCCATTGGGCCCTGCTGTCCCTCCCCTTGGTG
CTAGAGGCCTGTGTGCCCGTGAGCGTGCATGATCGTGTCCGTTATTTCAGTGACTTGTTC
CGTGGGTCTAGCCTTCCCCCCTCTGGACAAACCCCCATTGTGGCTCCTGCCTCCCTGGCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               737-942, gnl|bosTau2|chr22 (39142510-39142305)
               

               
               737-942, gnl|Hg17|chr3 (48577452-48577218)
               

               
               737-942, gnl|Mm7|chr9 (108694275-108694477)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               737-942, gnl|bosTau2|chr22 (39142510-39142305)
               

               
               737-942, gnl|Hg17|chr3 (48577452-48577218)
               

               
               737-942, gnl|Mm7|chr9 (108694275-108694477)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eru (0.120048)

	737-942, gnl\|bosTau2\|chr22 (39142510-39142305)
	737-942, gnl\|Hg17\|chr3 (48577452-48577218)
	737-942, gnl\|Mm7\|chr9 (108694275-108694477)