Ss1.1-reru30c_h13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCCCCCGGCCCCCCCGGTCCCTACGACATCATCAAAGGGGAGCCAGGGCTCCCTGGTC CTGAGGGCCCCGCAGGTCTGAAGGGGCTGCAGGGACCTCCAGGCCCCAAAGGACAGCAGG GTGTGACGGGATCGGTGGGCTTACCTGGGCCGCCAGGTATCCCCGGGTTTGACGGTGCCC CTGGCCAGAAAGGAGAGACGGGACCCTTTGGACCTCCTGGCCCCAGAGGCTTCCCGGGTC CGCCCGGGCCTGACGGGCTGCCAGGATCCATGGGACCCCCGGGCACCCCGTCGGTCGATC ACGGCTTCCTCGTGACCAGGCACAGTCAAACCACAGACGACCCCCAGTGTCCTCCTGGCA CCAAGATCCTCTACCACGGCTACTCTCTGCTCTACGTGCAGGGCAACGAGCGGGCGCACG GCCAGGACTTGGGCACGGCCGGCAGCTGCCTGCGCAAGTTCAGCACCATGCCCTTCCTCT TCTGCAACATCAACAACGTCTGCAACTTCGCGTCCCGGAACGACTACTCGTACTGGCTGT CGACGCCCGAGCCCATGCCCATGTCCATGGCGCCCATCACCGGGGACAGCATCAGGCCCT TCATCAGCAGGTGTGCGGTGTGCGAGGCGCCGGCCATGGTGATGGCAGTGCACAGCCAGA CCATCCAGATCCCGCAGTGCCCCAGCGGCTGGTCCTCCCTCTGGATTGGCTACTCCTTTG TGATGCACACCAGTGCCGGTGCCGAAGGTTCTGGCCAGGCCCTGGCTTCCCCCGGCTCCT GTCTGGAGGAGTTCAGAAGTGCCCCATTCATCGAGTGCCACGGCCGCGGGACCTGCAATT ACTATGCAAACGCCTACAGCTTCTGGCTCGCCACCATAGAGCGGAGCGAGATGTTCAAGA AGCCCACGCCGTCCACCTTGAAGGCCGGGGAGCTGCGCACGCACGTCAGTCGCTGCCAAG TGTGCATGCGGAGAACATGACGCGGCGGCCCTCGGCGACATCACAACATGGTGCTACTCC TTCCCTTCCCTTCTTCCTCTAACAGCAACGAACCCCAGAAATAGACTCTGTGTACCTCAC TGTCCAGTAGGGAAACCATAAAGGTGCCTTATAGGAAAATCCGCGTAACTAACACACCCT GCTTGTTGGCCTCTTCTTGCTGAAGGAGAACGCGAGACCACGCTAAGCTGTCCCCAGGGA CGCACCGAATGGCACTTGCGATGAAATAAAAATCTGTCTGTTCTACAGTCCAGTGCACTG ATGTGTGAAGTGAGACTCATCAGCAAACCACAGGGTGCCAGGAGGGCGCGGGGCCCGCCG CCCCGGCCAGCGCCCGCGTCCGTGCCTGTGTCGTCACAGCCCCGTTTCCACCCCCGCTGA ACGCTCTCTTTCTATCACTGTGTAGCCGTTTCACCGTTCGGGTCCCTTGGTCTGTACCAG TCACAGTCACGCGACGGCGGTGTCTGGCGCCCCCAGCCCCGCCGTCCGAGCCCCAGAGAG AAACGTCGGTCTTTCTGCTCTGTGCGGTACTATGCAGCTGCTTTTGCAGAATATCACGGA TTTCCTGTGGAACAAAGATGGTCCCCCAAGTAGGCAGAAATGAATTATATATATATTTTA GTAATTTATATAGATGTCAGCAACTAGGCAGGTCAAGCTTTCGTTTCATTGCCACTGTTC AAATAAAGCTTACAGTTTCTCCCTCTGAACGCCTGGGCTGTGCTTTAACAGATGATTCAG TGCTAGGGTGTTGAATGTGAAACACCGGTTTTCACTGCTCACCTCCAAGCCCAAAGTTGT GTCTTGCCAAAACCAAACCCGGGTTCACAGAGAACGGCGTCTGTCGCGGTGAAACGTGTA CTTTGAGCTTCTCGTTTTTAGTCTGTATTAAATATCTTCAGGGTTTGAAACACTAAATCA CAAACTGAATGACTTGACTTCAGAAGCAACAACCTTCAAAGGCCTTCCTTTGATTAGGAT TCCTCACTCTGCAGCCTGGCGGGAGAAACAGCTCTGTCGAATCCAAATAGCAGTATTTTT GACCTGTAAGCACATTCAGGTGGCTTCCTTGGTTTTTCGTGAGCTGTGTTCAGACTTCAG CAGGAGAGCAGGATTGGACCACCGTGCCCGAAATGACATTTCACTAAAAGTCTCCAAAAC GTTTTTAAGACTACTAAGGCCTTTTGTGTAATTTCTTTAAATGTGTATTTCTTTAAAATT CAAATTTGTAATAAAACTATTTGTATAAAAAAAAAACTTTTATTAATTTGTTGCTAGTAT TGCTACAGAAGCGGTAAAGGAAAAGTTACTGCACAAGCCACTAATAAATTTGGAAGCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCCCCCGGCCCCCCCGGTCCCTACGACATCATCAAAGGGGAGCCAGGGCTCCCTGGTC CTGAGGGCCCCGCAGGTCTGAAGGGGCTGCAGGGACCTCCAGGCCCCAAAGGACAGCAGG GTGTGACGGGATCGGTGGGCTTACCTGGGCCGCCAGGTATCCCCGGGTTTGACGGTGCCC CTGGCCAGAAAGGAGAGACGGGACCCTTTGGACCTCCTGGCCCCAGAGGCTTCCCGGGTC CGCCCGGGCCTGACGGGCTGCCAGGATCCATGGGACCCCCGGGCACCCCGTCGGTCGATC ACGGCTTCCTCGTGACCAGGCACAGTCAAACCACAGACGACCCCCAGTGTCCTCCTGGCA CCAAGATCCTCTACCACGGCTACTCTCTGCTCTACGTGCAGGGCAACGAGCGGGCGCACG GCCAGGACTTGGGCACGGCCGGCAGCTGCCTGCGCAAGTTCAGCACCATGCCCTTCCTCT TCTGCAACATCAACAACGTCTGCAACTTCGCGTCCCGGAACGACTACTCGTACTGGCTGT CGACGCCCGAGCCCATGCCCATGTCCATGGCGCCCATCACCGGGGACAGCATCAGGCCCT TCATCAGCAGGTGTGCGGTGTGCGAGGCGCCGGCCATGGTGATGGCAGTGCACAGCCAGA CCATCCAGATCCCGCAGTGCCCCAGCGGCTGGTCCTCCCTCTGGATTGGCTACTCCTTTG TGATGCACACCAGTGCCGGTGCCGAAGGTTCTGGCCAGGCCCTGGCTTCCCCCGGCTCCT GTCTGGAGGAGTTCAGAAGTGCCCCATTCATCGAGTGCCACGGCCGCGGGACCTGCAATT ACTATGCAAACGCCTACAGCTTCTGGCTCGCCACCATAGAGCGGAGCGAGATGTTCAAGA AGCCCACGCCGTCCACCTTGAAGGCCGGGGAGCTGCGCACGCACGTCAGTCGCTGCCAAG TGTGCATGCGGAGAACATGACGCGGCGGCCCTCGGCGACATCACAACATGGTGCTACTCC TTCCCTTCCCTTCTTCCTCTAACAGCAACGAACCCCAGAAATAGACTCTGTGTACCTCAC TGTCCAGTAGGGAAACCATAAAGGTGCCTTATAGGAAAATCCGCGTAACTAACACACCCT GCTTGTTGGCCTCTTCTTGCTGAAGGAGAACGCGAGACCACGCTAAGCTGTCCCCAGGGA CGCACCGAATGGCACTTGCGATGAAATAAAAATCTGTCTGTTCTACAGTCCAGTGCACTG ATGTGTGAAGTGAGACTCATCAGCAAACCACAGGGTGCCAGGAGGGCGCGGGGCCCGCCG CCCCGGCCAGCGCCCGCGTCCGTGCCTGTGTCGTCACAGCCCCGTTTCCACCCCCGCTGA ACGCTCTCTTTCTATCACTGTGTAGCCGTTTCACCGTTCGGGTCCCTTGGTCTGTACCAG TCACAGTCACGCGACGGCGGTGTCTGGCGCCCCCAGCCCCGCCGTCCGAGCCCCAGAGAG AAACGTCGGTCTTTCTGCTCTGTGCGGTACTATGCAGCTGCTTTTGCAGAATATCACGGA TTTCCTGTGGAACAAAGATGGTCCCCCAAGTAGGCAGAAATGAATTATATATATATTTTA GTAATTTATATAGATGTCAGCAACTAGGCAGGTCAAGCTTTCGTTTCATTGCCACTGTTC AAATAAAGCTTACAGTTTCTCCCTCTGAACGCCTGGGCTGTGCTTTAACAGATGATTCAG TGCTAGGGTGTTGAATGTGAAACACCGGTTTTCACTGCTCACCTCCAAGCCCAAAGTTGT GTCTTGCCAAAACCAAACCCGGGTTCACAGAGAACGGCGTCTGTCGCGGTGAAACGTGTA CTTTGAGCTTCTCGTTTTTAGTCTGTATTAAATATCTTCAGGGTTTGAAACACTAAATCA CAAACTGAATGACTTGACTTCAGAAGCAACAACCTTCAAAGGCCTTCCTTTGATTAGGAT TCCTCACTCTGCAGCCTGGCGGGAGAAACAGCTCTGTCGAATCCAAATAGCAGTATTTTT GACCTGTAAGCACATTCAGGTGGCTTCCTTGGTTTTTCGTGAGCTGTGTTCAGACTTCAG CAGGAGAGCAGGATTGGACCACCGTGCCCGAAATGACATTTCACTAAAAGTCTCCAAAAC GTTTTTAAGACTACTAAGGCCTTTTGTGTAATTTCTTTAAATGTGTATTTCTTTAAAATT CAAATTTGTAATAAAACTATTTGTATAAAAAAAAAACTTTTATTAATTTGTTGCTAGTAT TGCTACAGAAGCGGTAAAGGAAAAGTTACTGCACAAGCCACTAATAAATTTGGAAGCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr12 (46536903-46537024) | |
| 1-122, gnl|canFam2|chr22 (61475854-61476002) | |
| 1-122, gnl|dasNov1|scaffold_31260 (1289-1437) | |
| 1-122, gnl|echTel1|scaffold_319943 (46116-45979) | |
| 1-122, gnl|fr1|chrUn (237532436-237532301) | |
| 1-122, gnl|galGal2|chr1 (131808618-131808765) | |
| 1-122, gnl|hg17|chr13 (109615198-109615346) | |
| 1-122, gnl|Hg17|chr13 (109615329-109615208) | |
| 1-122, gnl|loxAfr1|scaffold_23602 (15215-15362) | |
| 1-122, gnl|mm7|chr8 (11177523-11177669) | |
| 1-122, gnl|Mm7|chr8 (11177652-11177531) | |
| 1-122, gnl|monDom2|scaffold_11 (37108215-37108073) | |
| 1-122, gnl|oryCun1|scaffold_83571 (4431-4284) | |
| 1-122, gnl|panTro1|chr14 (93052174-93052322) | |
| 1-122, gnl|rheMac2|chr17 (90252133-90252281) | |
| 1-122, gnl|rn3|chr16 (83132060-83131914) | |
| 1-122, gnl|tetNig1|chr2 (9488325-9488201) | |
| 1-122, gnl|xenTro1|scaffold_77 (226441-226308) | |
| 206-440, gnl|bosTau2|chr12 (46539216-46539450) | |
| 206-440, gnl|canFam2|chr22 (61473618-61473843) | |
| 206-440, gnl|danRer3|chr9 (10098211-10098434) | |
| 206-440, gnl|dasNov1|scaffold_57959 (713-914) | |
| 206-440, gnl|echTel1|scaffold_311745 (63341-63566) | |
| 206-440, gnl|fr1|chrUn (237532960-237532737) | |
| 206-440, gnl|galGal2|chr1 (131806241-131806463) | |
| 206-440, gnl|hg17|chr13 (109612568-109612793) | |
| 206-440, gnl|Hg17|chr13 (109612804-109612570) | |
| 206-440, gnl|loxAfr1|scaffold_23602 (12306-12531) | |
| 206-440, gnl|mm7|chr8 (11175202-11175420) | |
| 206-440, gnl|Mm7|chr8 (11175431-11175185) | |
| 206-440, gnl|monDom2|scaffold_11 (37115019-37114799) | |
| 206-440, gnl|oryCun1|scaffold_208611 (105117-105340) | |
| 206-440, gnl|panTro1|chr14 (93049555-93049780) | |
| 206-440, gnl|rheMac2|chr17 (90249514-90249739) | |
| 206-440, gnl|rn3|chr16 (83134342-83134124) | |
| 206-440, gnl|tetNig1|chr2 (9488819-9488594) | |
| 206-440, gnl|xenTro1|scaffold_77 (227851-227631) | |
| 464-1472, gnl|bosTau2|chr12 (46546165-46547168) | |
| 1493-1878, gnl|bosTau2|chr12 (46547220-46547604) | |
| 1493-1878, gnl|Hg17|chr13 (109600187-109599800) | |
| 1493-1878, gnl|Mm7|chr8 (11167288-11166896) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr12 (46536903-46537024) | |
| 1-122, gnl|canFam2|chr22 (61475854-61476002) | |
| 1-122, gnl|dasNov1|scaffold_31260 (1289-1437) | |
| 1-122, gnl|echTel1|scaffold_319943 (46116-45979) | |
| 1-122, gnl|fr1|chrUn (237532436-237532301) | |
| 1-122, gnl|galGal2|chr1 (131808618-131808765) | |
| 1-122, gnl|hg17|chr13 (109615198-109615346) | |
| 1-122, gnl|Hg17|chr13 (109615329-109615208) | |
| 1-122, gnl|loxAfr1|scaffold_23602 (15215-15362) | |
| 1-122, gnl|mm7|chr8 (11177523-11177669) | |
| 1-122, gnl|Mm7|chr8 (11177652-11177531) | |
| 1-122, gnl|monDom2|scaffold_11 (37108215-37108073) | |
| 1-122, gnl|oryCun1|scaffold_83571 (4431-4284) | |
| 1-122, gnl|panTro1|chr14 (93052174-93052322) | |
| 1-122, gnl|rheMac2|chr17 (90252133-90252281) | |
| 1-122, gnl|rn3|chr16 (83132060-83131914) | |
| 1-122, gnl|tetNig1|chr2 (9488325-9488201) | |
| 1-122, gnl|xenTro1|scaffold_77 (226441-226308) | |
| 206-440, gnl|bosTau2|chr12 (46539216-46539450) | |
| 206-440, gnl|canFam2|chr22 (61473618-61473843) | |
| 206-440, gnl|danRer3|chr9 (10098211-10098434) | |
| 206-440, gnl|dasNov1|scaffold_57959 (713-914) | |
| 206-440, gnl|echTel1|scaffold_311745 (63341-63566) | |
| 206-440, gnl|fr1|chrUn (237532960-237532737) | |
| 206-440, gnl|galGal2|chr1 (131806241-131806463) | |
| 206-440, gnl|hg17|chr13 (109612568-109612793) | |
| 206-440, gnl|Hg17|chr13 (109612804-109612570) | |
| 206-440, gnl|loxAfr1|scaffold_23602 (12306-12531) | |
| 206-440, gnl|mm7|chr8 (11175202-11175420) | |
| 206-440, gnl|Mm7|chr8 (11175431-11175185) | |
| 206-440, gnl|monDom2|scaffold_11 (37115019-37114799) | |
| 206-440, gnl|oryCun1|scaffold_208611 (105117-105340) | |
| 206-440, gnl|panTro1|chr14 (93049555-93049780) | |
| 206-440, gnl|rheMac2|chr17 (90249514-90249739) | |
| 206-440, gnl|rn3|chr16 (83134342-83134124) | |
| 206-440, gnl|tetNig1|chr2 (9488819-9488594) | |
| 206-440, gnl|xenTro1|scaffold_77 (227851-227631) | |
| 464-1472, gnl|bosTau2|chr12 (46546165-46547168) | |
| 1493-1878, gnl|bosTau2|chr12 (46547220-46547604) | |
| 1493-1878, gnl|Hg17|chr13 (109600187-109599800) | |
| 1493-1878, gnl|Mm7|chr8 (11167288-11166896) |
| Expressed library(ies): 65 entry(ies) | More info |
| Expressed library(ies): 65 entry(ies) | Help | Less info |
| eru (1.68067) | |
| aor (1.56219) | |
| fat (1.47427) | |
| cov (1.32153) | |
| ese (1.13852) | |
| ski (0.880411) | |
| bla (0.87043) | |
| amn (0.835422) | |
| ova (0.774793) | |
| eep (0.735384) | |
| sto (0.719295) | |
| clu (0.717875) | |
| gul (0.710353) | |
| kid (0.648677) | |
| nco (0.646935) | |
| nms (0.641574) | |
| hea (0.613497) | |
| sme (0.610874) | |
| csk (0.562984) | |
| cki (0.495704) | |
| lun (0.451467) | |
| che (0.408942) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| col (0.390016) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| sag (0.36543) | |
| cly (0.361925) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| vin (0.332557) | |
| csp (0.322373) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| jej (0.296765) | |
| liv (0.292569) | |
| spl (0.286369) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 65 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (1.68067) | |
| aor (1.56219) | |
| fat (1.47427) | |
| cov (1.32153) | |
| ese (1.13852) | |
| ski (0.880411) | |
| bla (0.87043) | |
| amn (0.835422) | |
| ova (0.774793) | |
| eep (0.735384) | |
| sto (0.719295) | |
| clu (0.717875) | |
| gul (0.710353) | |
| kid (0.648677) | |
| nco (0.646935) | |
| nms (0.641574) | |
| hea (0.613497) | |
| sme (0.610874) | |
| csk (0.562984) | |
| cki (0.495704) | |
| lun (0.451467) | |
| che (0.408942) | |
| pla (0.401016) | |
| fcc (0.39557) | |
| col (0.390016) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cmu (0.372787) | |
| nep (0.36785) | |
| sag (0.36543) | |
| cly (0.361925) | |
| ill (0.351185) | |
| fbs (0.350693) | |
| rec (0.346141) | |
| jca (0.34188) | |
| mcp (0.341297) | |
| vin (0.332557) | |
| csp (0.322373) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| jej (0.296765) | |
| liv (0.292569) | |
| spl (0.286369) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cbr (0.127975) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| eje (0.0988338) | |
| ldo (0.0970026) |