Non-Coding RNA Search

Ss1.1-reru30c_i5.5

Sequence:


               
               TTTTTTAAATGTAAGTGCAGCATTTCAAAACTTTTAAAAAACTGAATAGTAGTAGTAGTA
GTTTGTCATTTTCGGAATTGTTCTGCAACGTGAGTGGATTCACTGTCCTTGCGGGCCATG
TTATATATTTAACTGCTGACTGCTGAACCAAACCAAACTAAAAGAAAAAATAAGAGAGGA
ACTTAAATGCATTTTCTCCTCGTGCCGAATTCGGCACGAGGTTTGGCAGGAATAATACAT
AAGTGATGTTGTGTCCTCAGTGCATCACATCAGGAGGCACATGATGTCAGTTTATCCCAT
TATTGGTGATGTACACTGGACTAAGAGAAGTTGTTACCGAACATCTCATAAATAAGGTGC
GAGAAGATGTACTAAATTCATTGAATAACAACTTTCTTCAAACGCTAAATCAAGCTTGGA
ATGATCATCAGACAGCTATGGTGATGATTAGAGACATATTAATGTATATGGACCGTGTAT
ATGTACAACAAAATAATGTGGAGAATGTCTACAATTTGGGATTAATTATTTTTCGAGATC
AAGTTGTACGTTATGGGTGTATTAGGGATCACCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTAAATGTAAGTGCAGCATTTCAAAACTTTTAAAAAACTGAATAGTAGTAGTAGTA
GTTTGTCATTTTCGGAATTGTTCTGCAACGTGAGTGGATTCACTGTCCTTGCGGGCCATG
TTATATATTTAACTGCTGACTGCTGAACCAAACCAAACTAAAAGAAAAAATAAGAGAGGA
ACTTAAATGCATTTTCTCCTCGTGCCGAATTCGGCACGAGGTTTGGCAGGAATAATACAT
AAGTGATGTTGTGTCCTCAGTGCATCACATCAGGAGGCACATGATGTCAGTTTATCCCAT
TATTGGTGATGTACACTGGACTAAGAGAAGTTGTTACCGAACATCTCATAAATAAGGTGC
GAGAAGATGTACTAAATTCATTGAATAACAACTTTCTTCAAACGCTAAATCAAGCTTGGA
ATGATCATCAGACAGCTATGGTGATGATTAGAGACATATTAATGTATATGGACCGTGTAT
ATGTACAACAAAATAATGTGGAGAATGTCTACAATTTGGGATTAATTATTTTTCGAGATC
AAGTTGTACGTTATGGGTGTATTAGGGATCACCTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62857567|ref|NP_001015975.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62857567|ref|NP_001015975.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-197, gnl|bosTau2|chr3 (56998588-56998784)
               

               
               1-197, gnl|Hg17|chr1 (61633741-61633545)
               

               
               1-197, gnl|Mm7|chr4 (97504671-97504432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr3 (56998588-56998784)
               

               
               1-197, gnl|Hg17|chr1 (61633741-61633545)
               

               
               1-197, gnl|Mm7|chr4 (97504671-97504432)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               eru (0.120048)

	1-197, gnl\|bosTau2\|chr3 (56998588-56998784)
	1-197, gnl\|Hg17\|chr1 (61633741-61633545)
	1-197, gnl\|Mm7\|chr4 (97504671-97504432)