Non-Coding RNA Search

Ss1.1-reru30c_j16.5

Sequence:


               
               GGGGTACTTCCCTCCGTAAGACTGACCGAGACCATTTGATCCATTTCAGGTAAAGAGCAA
ATGTCCCAAGGAAAGGCTGAAGGAACATTTGATCAGGACTCTGCCTTTCTGAGGTTGCTT
TCTGTTAAGTGGCAGGTCCCAGCGCCGGGGGTAGAGAAGGCGCTCCCTCCCCTTGGGCCG
CCGAAGTGGAGGGAACCAAACTGACACAGGCTTCAGCGCAGTTTTGATTGCCTGGTGATC
AGTCTCTTTTAGGAGATGGGGTACTTGGCATTCTGGTGTACCTAGGAGATGTGTTAAACA
GACGTGCTTGTGAGTATTTATCCTTCATTTTATGCAATTAACCAAATCCACCAAAAAAAA
GTGACCATGAAATCCTGTCTTTGTCTTTTTACTACATGTATGAACTCTCTCCTGTGAATG
AGTACTGTAGTAATCCATTTCAAGGGAGCCTTATTTCAGAAATATTTCACACTGGTGCAC
ACGGAAAAGACTTCTTCTTTTCCTTTAAGGCTAAAGACAAGAATGTCCTGCTATACAGGT
GCAACTCAATCCCTGTTCATAAAACCCTGTAGATAGAGACATTTTACCCTTGGAAGGAGC
TGTGTCCCACAACGTGGTTGCCATTGATTCTTTGCAAATGGCTTTAGAAATTTCCAAGGG
GTCTAACCGTGGACATTCACAGGTGTCTCCCTTCTACCATGTAGAACCCTTTGGCTTAAT
TTTCTTCCAGATATGGGGGGATACCTGCCTGTTTTTCAAAGTGTTTATTTACTGCTGTTA
CTATTTGATTAGAATGTATTAAATAAAAAAAAACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTACTTCCCTCCGTAAGACTGACCGAGACCATTTGATCCATTTCAGGTAAAGAGCAA
ATGTCCCAAGGAAAGGCTGAAGGAACATTTGATCAGGACTCTGCCTTTCTGAGGTTGCTT
TCTGTTAAGTGGCAGGTCCCAGCGCCGGGGGTAGAGAAGGCGCTCCCTCCCCTTGGGCCG
CCGAAGTGGAGGGAACCAAACTGACACAGGCTTCAGCGCAGTTTTGATTGCCTGGTGATC
AGTCTCTTTTAGGAGATGGGGTACTTGGCATTCTGGTGTACCTAGGAGATGTGTTAAACA
GACGTGCTTGTGAGTATTTATCCTTCATTTTATGCAATTAACCAAATCCACCAAAAAAAA
GTGACCATGAAATCCTGTCTTTGTCTTTTTACTACATGTATGAACTCTCTCCTGTGAATG
AGTACTGTAGTAATCCATTTCAAGGGAGCCTTATTTCAGAAATATTTCACACTGGTGCAC
ACGGAAAAGACTTCTTCTTTTCCTTTAAGGCTAAAGACAAGAATGTCCTGCTATACAGGT
GCAACTCAATCCCTGTTCATAAAACCCTGTAGATAGAGACATTTTACCCTTGGAAGGAGC
TGTGTCCCACAACGTGGTTGCCATTGATTCTTTGCAAATGGCTTTAGAAATTTCCAAGGG
GTCTAACCGTGGACATTCACAGGTGTCTCCCTTCTACCATGTAGAACCCTTTGGCTTAAT
TTTCTTCCAGATATGGGGGGATACCTGCCTGTTTTTCAAAGTGTTTATTTACTGCTGTTA
CTATTTGATTAGAATGTATTAAATAAAAAAAAACCG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               471-588, - strand, RNAz p=0.796298
               

               
               663-777, + strand, RNAz p=0.950978

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-588, - strand, RNAz p=0.796298
               

               
               663-777, + strand, RNAz p=0.950978

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003877, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003877, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-813, gnl|bosTau2|chr5 (15397564-15396759)
               

               
               1-813, gnl|Hg17|chr12 (92471618-92472437)
               

               
               1-813, gnl|Mm7|chr10 (94973421-94972499)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-813, gnl|bosTau2|chr5 (15397564-15396759)
               

               
               1-813, gnl|Hg17|chr12 (92471618-92472437)
               

               
               1-813, gnl|Mm7|chr10 (94973421-94972499)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pgl (0.35545)
               

               
               spl (0.286369)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.35545)
               

               
               spl (0.286369)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	471-588, - strand, RNAz p=0.796298
	663-777, + strand, RNAz p=0.950978

	1-813, gnl\|bosTau2\|chr5 (15397564-15396759)
	1-813, gnl\|Hg17\|chr12 (92471618-92472437)
	1-813, gnl\|Mm7\|chr10 (94973421-94972499)

	pgl (0.35545)
	spl (0.286369)
	lun (0.150489)
	ste (0.135208)
	cov (0.132153)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)