Ss1.1-reru30c_k14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAACAGCCTTTAAAAATTTTATTGAGAAAGTAGAGGCTCTAACTAAAGAGGAACTGGAA TTTGAAGTGCCTTTTAGGGATTTGGGGTTTAATGGAGCTCCCTATAGGAGTACCTGCCTC CTTCAGCCCACTAGTAGTGCGCTGGTAAATGCTACAGAATGGCCACCTTTTGTGGTGACA TTGGATGAAGTGGAACTGATTCACTTTGAGCGAGTCCAGTTTCACCTGAAGAACTTTGAT ATGGTAATCGTCTACAAGGACTACAGCAAGAAAGTGACGATGATCAATGCCATTCCTGTA GCCTCTCTTGACCCCATCAAAGAGTGGTTGAATTCCTGTGACCTAAAGTATACAGAAGGA GTGCAGTCCCTCAACTGGACTAGAATCATGAAGACCATGGTTGATGACCCTGAGGGCTTC TTCGAACAAGGTGGCTGGTCTTTCCTAGAGCCTGAGGGTGAGGGAAGTGATGCTGAGGAA GGGGATTCTGAATCTGAAATTGAAGATGAGACTTTTAATCCTTCAGAGGATGACTATGAA GAAGAGGAAGAGGACAGTGATGAAGATTATTCATCAGAAGCCGAAGAATCAGATTATTCC AAGGAATCATTGGGAAGTGAAGAAGAGAGTGGAAAGGACTGGGATGAACTAGAGGAAGAA GCCAGAAAAGCCGATCGTGAAAGTCGCTATGAGGAGGAAGAAGAACAGAGTCGAAGTATG AGCCGGAAGAGGAAGGCATCTGTGCACAGTTCAGGCCGAGGCTCAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAACAGCCTTTAAAAATTTTATTGAGAAAGTAGAGGCTCTAACTAAAGAGGAACTGGAA TTTGAAGTGCCTTTTAGGGATTTGGGGTTTAATGGAGCTCCCTATAGGAGTACCTGCCTC CTTCAGCCCACTAGTAGTGCGCTGGTAAATGCTACAGAATGGCCACCTTTTGTGGTGACA TTGGATGAAGTGGAACTGATTCACTTTGAGCGAGTCCAGTTTCACCTGAAGAACTTTGAT ATGGTAATCGTCTACAAGGACTACAGCAAGAAAGTGACGATGATCAATGCCATTCCTGTA GCCTCTCTTGACCCCATCAAAGAGTGGTTGAATTCCTGTGACCTAAAGTATACAGAAGGA GTGCAGTCCCTCAACTGGACTAGAATCATGAAGACCATGGTTGATGACCCTGAGGGCTTC TTCGAACAAGGTGGCTGGTCTTTCCTAGAGCCTGAGGGTGAGGGAAGTGATGCTGAGGAA GGGGATTCTGAATCTGAAATTGAAGATGAGACTTTTAATCCTTCAGAGGATGACTATGAA GAAGAGGAAGAGGACAGTGATGAAGATTATTCATCAGAAGCCGAAGAATCAGATTATTCC AAGGAATCATTGGGAAGTGAAGAAGAGAGTGGAAAGGACTGGGATGAACTAGAGGAAGAA GCCAGAAAAGCCGATCGTGAAAGTCGCTATGAGGAGGAAGAAGAACAGAGTCGAAGTATG AGCCGGAAGAGGAAGGCATCTGTGCACAGTTCAGGCCGAGGCTCAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 482-599, - strand, RNAz p=0.924477 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 482-599, - strand, RNAz p=0.924477 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 162-332, gnl|bosTau2|chr10 (15894075-15893905) | |
| 162-332, gnl|canFam2|chr15 (21404579-21404780) | |
| 162-332, gnl|canFam2|chr15 (21404587-21404756) | |
| 162-332, gnl|danRer3|chr16 (45477207-45477407) | |
| 162-332, gnl|danRer3|chr16 (45477215-45477384) | |
| 162-332, gnl|dasNov1|scaffold_177068 (120-321) | |
| 162-332, gnl|dasNov1|scaffold_177068 (130-297) | |
| 162-332, gnl|echTel1|scaffold_311761 (126395-126194) | |
| 162-332, gnl|echTel1|scaffold_311761 (126387-126218) | |
| 162-332, gnl|fr1|chrUn (269029060-269028880) | |
| 162-332, gnl|fr1|chrUn (269029052-269028883) | |
| 162-332, gnl|hg17|chr12 (16443973-16444140) | |
| 162-332, gnl|hg17|chr14 (20895189-20895390) | |
| 162-332, gnl|Hg17|chr14 (20895366-20895196) | |
| 162-332, gnl|loxAfr1|scaffold_22671 (19046-18845) | |
| 162-332, gnl|loxAfr1|scaffold_22671 (19038-18869) | |
| 162-332, gnl|mm7|chr14 (47504500-47504702) | |
| 162-332, gnl|mm7|chr14 (47504508-47504677) | |
| 162-332, gnl|Mm7|chr14 (47504677-47504507) | |
| 162-332, gnl|monDom2|scaffold_0 (121535412-121535581) | |
| 162-332, gnl|monDom2|scaffold_12 (29136568-29136369) | |
| 162-332, gnl|oryCun1|scaffold_158425 (1849-2050) | |
| 162-332, gnl|oryCun1|scaffold_158425 (1857-2026) | |
| 162-332, gnl|panTro1|chr15 (19814048-19814249) | |
| 162-332, gnl|panTro1|chr15 (19814056-19814225) | |
| 162-332, gnl|rheMac2|chr7 (84085122-84085323) | |
| 162-332, gnl|rheMac2|chr7 (84085130-84085299) | |
| 162-332, gnl|rn3|chr15 (27630007-27630207) | |
| 162-332, gnl|rn3|chr15 (27630013-27630182) | |
| 162-332, gnl|tetNig1|chrUn_random (92618023-92617846) | |
| 162-332, gnl|tetNig1|chrUn_random (92618018-92617849) | |
| 162-332, gnl|xenTro1|scaffold_339 (231143-230946) | |
| 162-332, gnl|xenTro1|scaffold_339 (231137-230968) | |
| 461-599, gnl|bosTau2|chr10 (15886304-15886166) | |
| 461-599, gnl|Hg17|chr14 (20891833-20891695) | |
| 461-599, gnl|Mm7|chr14 (47496995-47496859) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-332, gnl|bosTau2|chr10 (15894075-15893905) | |
| 162-332, gnl|canFam2|chr15 (21404579-21404780) | |
| 162-332, gnl|canFam2|chr15 (21404587-21404756) | |
| 162-332, gnl|danRer3|chr16 (45477207-45477407) | |
| 162-332, gnl|danRer3|chr16 (45477215-45477384) | |
| 162-332, gnl|dasNov1|scaffold_177068 (120-321) | |
| 162-332, gnl|dasNov1|scaffold_177068 (130-297) | |
| 162-332, gnl|echTel1|scaffold_311761 (126395-126194) | |
| 162-332, gnl|echTel1|scaffold_311761 (126387-126218) | |
| 162-332, gnl|fr1|chrUn (269029060-269028880) | |
| 162-332, gnl|fr1|chrUn (269029052-269028883) | |
| 162-332, gnl|hg17|chr12 (16443973-16444140) | |
| 162-332, gnl|hg17|chr14 (20895189-20895390) | |
| 162-332, gnl|Hg17|chr14 (20895366-20895196) | |
| 162-332, gnl|loxAfr1|scaffold_22671 (19046-18845) | |
| 162-332, gnl|loxAfr1|scaffold_22671 (19038-18869) | |
| 162-332, gnl|mm7|chr14 (47504500-47504702) | |
| 162-332, gnl|mm7|chr14 (47504508-47504677) | |
| 162-332, gnl|Mm7|chr14 (47504677-47504507) | |
| 162-332, gnl|monDom2|scaffold_0 (121535412-121535581) | |
| 162-332, gnl|monDom2|scaffold_12 (29136568-29136369) | |
| 162-332, gnl|oryCun1|scaffold_158425 (1849-2050) | |
| 162-332, gnl|oryCun1|scaffold_158425 (1857-2026) | |
| 162-332, gnl|panTro1|chr15 (19814048-19814249) | |
| 162-332, gnl|panTro1|chr15 (19814056-19814225) | |
| 162-332, gnl|rheMac2|chr7 (84085122-84085323) | |
| 162-332, gnl|rheMac2|chr7 (84085130-84085299) | |
| 162-332, gnl|rn3|chr15 (27630007-27630207) | |
| 162-332, gnl|rn3|chr15 (27630013-27630182) | |
| 162-332, gnl|tetNig1|chrUn_random (92618023-92617846) | |
| 162-332, gnl|tetNig1|chrUn_random (92618018-92617849) | |
| 162-332, gnl|xenTro1|scaffold_339 (231143-230946) | |
| 162-332, gnl|xenTro1|scaffold_339 (231137-230968) | |
| 461-599, gnl|bosTau2|chr10 (15886304-15886166) | |
| 461-599, gnl|Hg17|chr14 (20891833-20891695) | |
| 461-599, gnl|Mm7|chr14 (47496995-47496859) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nco (0.161734) | |
| lnt (0.142308) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| lnt (0.142308) | |
| eru (0.120048) | |
| ecc (0.115035) |