Ss1.1-reru30c_k19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAGGCCCGCAAGCTCTACAAGTGCCCAGCCTGTGGAGAGACCCTGCAAGACAGCACA GGCAACTTCTCCTCCCCCGAGTACCCCAACGGCTACTCTGCCCACATGCACTGTGTCTGG CGCATCTCCGTCACGCCCGGAGAGAAGATCATTCTGAACTTCACGTCCATGGACCTGTAC CGCAGCCGCCTCTGCTGGTATGACTACGTGGAGGTCCGAGACGGCTTCTGGAGGAAGGCG CCGCTCCGAGGCCGCTTCTGCGGGGGCAAACTGCCCGAGCCCATCGTCTCCACTGACAGC CGCCTCTGGGTTGAGTTCCGCAGTAGCAGCAACTGGGTCGGGAAGGGCTTCTTTGCCGTC TATGAAGCCATCTGTGGGGGAGATGTGAAAAAGGACAATGGCCACATCCAGTCACCCAAT TACCCAGACGACTACCGGCCTAGCAAAGTCTGCATCTGGCGGATCCAAGTATCTGAGGGC TTCCACGTGGGCCTCACGTTCCAGTCCTTTGAGATTGAGCGCCACGACAGCTGTGCCTAC GACTACCTGGAGGTACGAGATGGACACAGTGAGAGCAGCACCCTCATAGGGCGCTACTGT GGCTACGAGAAGCCCGATGACATCAAGAGCACGTCCAGCCGCCTCTGGCTCAAGTTCGTC TCCGACGGGTCCATTAACAAAGCTGGCTTTGCCGTCAACTTTTTCAAAGAGGTGGACGAG TGCTCTCGGCCCAACCGCGGGGGCTGTGAGCAGCGGTGCCTCAACACTCTGGGCAGCTAC AAGTGCAGCTGCGACCCTGGGTACGAGCTGGCCCCCGACAAGCGTCGCTGTGAGGCTGCC TGTGGTGGATTCCTCACCAAACTCAATGGCTCCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAGGCCCGCAAGCTCTACAAGTGCCCAGCCTGTGGAGAGACCCTGCAAGACAGCACA GGCAACTTCTCCTCCCCCGAGTACCCCAACGGCTACTCTGCCCACATGCACTGTGTCTGG CGCATCTCCGTCACGCCCGGAGAGAAGATCATTCTGAACTTCACGTCCATGGACCTGTAC CGCAGCCGCCTCTGCTGGTATGACTACGTGGAGGTCCGAGACGGCTTCTGGAGGAAGGCG CCGCTCCGAGGCCGCTTCTGCGGGGGCAAACTGCCCGAGCCCATCGTCTCCACTGACAGC CGCCTCTGGGTTGAGTTCCGCAGTAGCAGCAACTGGGTCGGGAAGGGCTTCTTTGCCGTC TATGAAGCCATCTGTGGGGGAGATGTGAAAAAGGACAATGGCCACATCCAGTCACCCAAT TACCCAGACGACTACCGGCCTAGCAAAGTCTGCATCTGGCGGATCCAAGTATCTGAGGGC TTCCACGTGGGCCTCACGTTCCAGTCCTTTGAGATTGAGCGCCACGACAGCTGTGCCTAC GACTACCTGGAGGTACGAGATGGACACAGTGAGAGCAGCACCCTCATAGGGCGCTACTGT GGCTACGAGAAGCCCGATGACATCAAGAGCACGTCCAGCCGCCTCTGGCTCAAGTTCGTC TCCGACGGGTCCATTAACAAAGCTGGCTTTGCCGTCAACTTTTTCAAAGAGGTGGACGAG TGCTCTCGGCCCAACCGCGGGGGCTGTGAGCAGCGGTGCCTCAACACTCTGGGCAGCTAC AAGTGCAGCTGCGACCCTGGGTACGAGCTGGCCCCCGACAAGCGTCGCTGTGAGGCTGCC TGTGGTGGATTCCTCACCAAACTCAATGGCTCCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 62-168, - strand, RNAz p=0.951824 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 62-168, - strand, RNAz p=0.951824 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 29-168, gnl|bosTau2|chr8 (31374434-31374297) | |
| 29-168, gnl|canFam2|chr25 (38062911-38062776) | |
| 29-168, gnl|danRer3|chr1 (17135213-17135080) | |
| 29-168, gnl|dasNov1|scaffold_15284 (25477-25342) | |
| 29-168, gnl|echTel1|scaffold_313141 (94791-94656) | |
| 29-168, gnl|fr1|chrUn (42120680-42120803) | |
| 29-168, gnl|galGal2|chr6 (15842470-15842336) | |
| 29-168, gnl|hg17|chr8 (22093813-22093947) | |
| 29-168, gnl|Hg17|chr8 (22093823-22093975) | |
| 29-168, gnl|loxAfr1|scaffold_33836 (4572-4707) | |
| 29-168, gnl|mm7|chr14 (65149301-65149162) | |
| 29-168, gnl|Mm7|chr14 (65149284-65149144) | |
| 29-168, gnl|monDom2|scaffold_1 (73394002-73393865) | |
| 29-168, gnl|oryCun1|scaffold_171653 (264-129) | |
| 29-168, gnl|panTro1|chr7 (23026429-23026563) | |
| 29-168, gnl|rheMac2|chr8 (22104074-22104208) | |
| 29-168, gnl|rn3|chr15 (50922858-50922719) | |
| 29-168, gnl|tetNig1|chr4 (1525883-1525768) | |
| 29-168, gnl|xenTro1|scaffold_106 (1287076-1286943) | |
| 245-367, gnl|bosTau2|chr26 (7788355-7788233) | |
| 245-367, gnl|canFam2|chr28 (12799222-12799353) | |
| 245-367, gnl|danRer3|chr1 (17134564-17134695) | |
| 245-367, gnl|dasNov1|scaffold_15284 (12853-12984) | |
| 245-367, gnl|echTel1|scaffold_54545 (119-4) | |
| 245-367, gnl|fr1|chrUn (18909696-18909570) | |
| 245-367, gnl|galGal2|chr6 (15837470-15837596) | |
| 245-367, gnl|hg17|chr10 (98146927-98147058) | |
| 245-367, gnl|Hg17|chr10 (98147055-98146933) | |
| 245-367, gnl|loxAfr1|scaffold_33836 (20696-20570) | |
| 245-367, gnl|mm7|chr19 (40999485-40999616) | |
| 245-367, gnl|Mm7|chr19 (40999612-40999491) | |
| 245-367, gnl|monDom2|scaffold_14 (26270927-26270796) | |
| 245-367, gnl|oryCun1|scaffold_185931 (2906-2772) | |
| 245-367, gnl|panTro1|chr8 (99838731-99838862) | |
| 245-367, gnl|rheMac2|chr9 (95936989-95937120) | |
| 245-367, gnl|rn3|chr1 (246394145-246394276) | |
| 245-367, gnl|tetNig1|chr18 (7647029-7646905) | |
| 245-367, gnl|xenTro1|scaffold_171 (1750688-1750814) | |
| 480-707, gnl|bosTau2|chr26 (7786227-7786004) | |
| 480-707, gnl|Hg17|chr10 (98145159-98144936) | |
| 480-707, gnl|Mm7|chr19 (40997744-40997521) | |
| 708-833, gnl|bosTau2|chr26 (7777580-7777455) | |
| 708-833, gnl|canFam2|chr28 (12789265-12789418) | |
| 708-833, gnl|danRer3|chr1 (17131267-17131408) | |
| 708-833, gnl|dasNov1|scaffold_15284 (3079-3232) | |
| 708-833, gnl|echTel1|scaffold_283375 (44488-44335) | |
| 708-833, gnl|fr1|chrUn (18910739-18910588) | |
| 708-833, gnl|galGal2|chr6 (15830702-15830847) | |
| 708-833, gnl|hg17|chr10 (98136690-98136844) | |
| 708-833, gnl|Hg17|chr10 (98136827-98136702) | |
| 708-833, gnl|loxAfr1|scaffold_2693 (23176-23330) | |
| 708-833, gnl|mm7|chr19 (40992448-40992601) | |
| 708-833, gnl|Mm7|chr19 (40992585-40992460) | |
| 708-833, gnl|monDom2|scaffold_14 (26290464-26290314) | |
| 708-833, gnl|oryCun1|scaffold_153511 (1292-1137) | |
| 708-833, gnl|panTro1|chr8 (99828486-99828640) | |
| 708-833, gnl|rheMac2|chr9 (95926827-95926980) | |
| 708-833, gnl|rn3|chr1 (246387346-246387499) | |
| 708-833, gnl|tetNig1|chr18 (7647869-7647731) | |
| 708-833, gnl|xenTro1|scaffold_171 (1747145-1747295) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-168, gnl|bosTau2|chr8 (31374434-31374297) | |
| 29-168, gnl|canFam2|chr25 (38062911-38062776) | |
| 29-168, gnl|danRer3|chr1 (17135213-17135080) | |
| 29-168, gnl|dasNov1|scaffold_15284 (25477-25342) | |
| 29-168, gnl|echTel1|scaffold_313141 (94791-94656) | |
| 29-168, gnl|fr1|chrUn (42120680-42120803) | |
| 29-168, gnl|galGal2|chr6 (15842470-15842336) | |
| 29-168, gnl|hg17|chr8 (22093813-22093947) | |
| 29-168, gnl|Hg17|chr8 (22093823-22093975) | |
| 29-168, gnl|loxAfr1|scaffold_33836 (4572-4707) | |
| 29-168, gnl|mm7|chr14 (65149301-65149162) | |
| 29-168, gnl|Mm7|chr14 (65149284-65149144) | |
| 29-168, gnl|monDom2|scaffold_1 (73394002-73393865) | |
| 29-168, gnl|oryCun1|scaffold_171653 (264-129) | |
| 29-168, gnl|panTro1|chr7 (23026429-23026563) | |
| 29-168, gnl|rheMac2|chr8 (22104074-22104208) | |
| 29-168, gnl|rn3|chr15 (50922858-50922719) | |
| 29-168, gnl|tetNig1|chr4 (1525883-1525768) | |
| 29-168, gnl|xenTro1|scaffold_106 (1287076-1286943) | |
| 245-367, gnl|bosTau2|chr26 (7788355-7788233) | |
| 245-367, gnl|canFam2|chr28 (12799222-12799353) | |
| 245-367, gnl|danRer3|chr1 (17134564-17134695) | |
| 245-367, gnl|dasNov1|scaffold_15284 (12853-12984) | |
| 245-367, gnl|echTel1|scaffold_54545 (119-4) | |
| 245-367, gnl|fr1|chrUn (18909696-18909570) | |
| 245-367, gnl|galGal2|chr6 (15837470-15837596) | |
| 245-367, gnl|hg17|chr10 (98146927-98147058) | |
| 245-367, gnl|Hg17|chr10 (98147055-98146933) | |
| 245-367, gnl|loxAfr1|scaffold_33836 (20696-20570) | |
| 245-367, gnl|mm7|chr19 (40999485-40999616) | |
| 245-367, gnl|Mm7|chr19 (40999612-40999491) | |
| 245-367, gnl|monDom2|scaffold_14 (26270927-26270796) | |
| 245-367, gnl|oryCun1|scaffold_185931 (2906-2772) | |
| 245-367, gnl|panTro1|chr8 (99838731-99838862) | |
| 245-367, gnl|rheMac2|chr9 (95936989-95937120) | |
| 245-367, gnl|rn3|chr1 (246394145-246394276) | |
| 245-367, gnl|tetNig1|chr18 (7647029-7646905) | |
| 245-367, gnl|xenTro1|scaffold_171 (1750688-1750814) | |
| 480-707, gnl|bosTau2|chr26 (7786227-7786004) | |
| 480-707, gnl|Hg17|chr10 (98145159-98144936) | |
| 480-707, gnl|Mm7|chr19 (40997744-40997521) | |
| 708-833, gnl|bosTau2|chr26 (7777580-7777455) | |
| 708-833, gnl|canFam2|chr28 (12789265-12789418) | |
| 708-833, gnl|danRer3|chr1 (17131267-17131408) | |
| 708-833, gnl|dasNov1|scaffold_15284 (3079-3232) | |
| 708-833, gnl|echTel1|scaffold_283375 (44488-44335) | |
| 708-833, gnl|fr1|chrUn (18910739-18910588) | |
| 708-833, gnl|galGal2|chr6 (15830702-15830847) | |
| 708-833, gnl|hg17|chr10 (98136690-98136844) | |
| 708-833, gnl|Hg17|chr10 (98136827-98136702) | |
| 708-833, gnl|loxAfr1|scaffold_2693 (23176-23330) | |
| 708-833, gnl|mm7|chr19 (40992448-40992601) | |
| 708-833, gnl|Mm7|chr19 (40992585-40992460) | |
| 708-833, gnl|monDom2|scaffold_14 (26290464-26290314) | |
| 708-833, gnl|oryCun1|scaffold_153511 (1292-1137) | |
| 708-833, gnl|panTro1|chr8 (99828486-99828640) | |
| 708-833, gnl|rheMac2|chr9 (95926827-95926980) | |
| 708-833, gnl|rn3|chr1 (246387346-246387499) | |
| 708-833, gnl|tetNig1|chr18 (7647869-7647731) | |
| 708-833, gnl|xenTro1|scaffold_171 (1747145-1747295) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) |