Non-Coding RNA Search

Ss1.1-reru31c_g5.5

Sequence:


               
               AGGGGGTTTTAGACACCATCATCACAAAATGGGTTAACTCCTGCTGATGATGAAGTCAAC
GTAAATTGTTACTTTCATGTCTACTATTTAGCACATAATTGCACTTGACTAAAGTTGAGT
GGGATAGTCATTTGCCTACACAAGGCCTTGTCTTCTGCCTGAAGAGCTACTGGGAGACAT
AAGATTCGTTTGTCCAGGATTGGAATCGGAGACCTTCAGGGTGGGTCCAATTCTCTCCAG
GATTGATTAGGGCCACATTCTATCACAGATTGTCCTATATGAGGACAACAGACTCTTTCT
TGTTGCTAGGAGTATGATTTACGGCATTTCCAGCAGGAAGGTCAGTTTCAAAATGTGGAG
TGACAAAGAAACTTTGTCAACACCTCTCCTAGCAAAGTCGAGCCTGTAGAGGGAGCAGGC
ACCTTTCCAGGCATGGAGAGGAATAGACGGAAGAAGGGTGACTGCATAAGATCAGGTTCA
GCCCAGAAAGTGTAAAATTGGAGCCACCACTGATTGCTTGGGATACAGTAAATCATGTAG
TAGCATTGAAGTTCATGAATAACACAGGGATCAATTCTATGAGGATGGAGGATGTAGTTA
GGTATAAGAAATCCATGAAGTACATAGCCATGTGTTTTACTGGGTGAATCACAATGCTTT
GCATTAACTTAATGCCATAGTACTTCCTGGCTTATATTACCGCAAGGTAAAGCACTTTCT
CAAAGGGATCTATTAGAAAGCTACATGATTTCAGCTGTTTGTTGACCTTGACAAAATATG
TTTCCAAAGATATAATCAAAATGTTTTTCTATTGATTAAAAAAGCATAAATATTAAACCT
ATCCATAGAGACATTTAAGTGTAAAAACAGATTGTATGCTTTAAAATGTACTCTAATAAA
TGATATGAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGGTTTTAGACACCATCATCACAAAATGGGTTAACTCCTGCTGATGATGAAGTCAAC
GTAAATTGTTACTTTCATGTCTACTATTTAGCACATAATTGCACTTGACTAAAGTTGAGT
GGGATAGTCATTTGCCTACACAAGGCCTTGTCTTCTGCCTGAAGAGCTACTGGGAGACAT
AAGATTCGTTTGTCCAGGATTGGAATCGGAGACCTTCAGGGTGGGTCCAATTCTCTCCAG
GATTGATTAGGGCCACATTCTATCACAGATTGTCCTATATGAGGACAACAGACTCTTTCT
TGTTGCTAGGAGTATGATTTACGGCATTTCCAGCAGGAAGGTCAGTTTCAAAATGTGGAG
TGACAAAGAAACTTTGTCAACACCTCTCCTAGCAAAGTCGAGCCTGTAGAGGGAGCAGGC
ACCTTTCCAGGCATGGAGAGGAATAGACGGAAGAAGGGTGACTGCATAAGATCAGGTTCA
GCCCAGAAAGTGTAAAATTGGAGCCACCACTGATTGCTTGGGATACAGTAAATCATGTAG
TAGCATTGAAGTTCATGAATAACACAGGGATCAATTCTATGAGGATGGAGGATGTAGTTA
GGTATAAGAAATCCATGAAGTACATAGCCATGTGTTTTACTGGGTGAATCACAATGCTTT
GCATTAACTTAATGCCATAGTACTTCCTGGCTTATATTACCGCAAGGTAAAGCACTTTCT
CAAAGGGATCTATTAGAAAGCTACATGATTTCAGCTGTTTGTTGACCTTGACAAAATATG
TTTCCAAAGATATAATCAAAATGTTTTTCTATTGATTAAAAAAGCATAAATATTAAACCT
ATCCATAGAGACATTTAAGTGTAAAAACAGATTGTATGCTTTAAAATGTACTCTAATAAA
TGATATGAAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               597-716, - strand, RNAz p=0.919624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-716, - strand, RNAz p=0.919624

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-911, gnl|bosTau2|chr1 (41151795-41152694)
               

               
               19-911, gnl|Hg17|chr3 (120621498-120622442)
               

               
               19-911, gnl|Mm7|chr16 (38309124-38308094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-911, gnl|bosTau2|chr1 (41151795-41152694)
               

               
               19-911, gnl|Hg17|chr3 (120621498-120622442)
               

               
               19-911, gnl|Mm7|chr16 (38309124-38308094)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               gul (0.177588)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	19-911, gnl\|bosTau2\|chr1 (41151795-41152694)
	19-911, gnl\|Hg17\|chr3 (120621498-120622442)
	19-911, gnl\|Mm7\|chr16 (38309124-38308094)

	gul (0.177588)
	nco (0.161734)
	bfe (0.149858)
	ova (0.129132)
	eep (0.122564)
	eru (0.120048)