Ss1.1-reru31c_j1.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
AAACTCTGACATTGAGCTTCGCAAAGGGGAGACGGACATTGGGCGGAAGAACACCAGAGT GAGGCTGGTCTTCCGCGTCCACATCCCGCAGCCCAACGGCCGGACACTGTCGCTGCAGGT GGCCTCCAACCCCATCGAGTGCTCCCAGCGCTCAGCCCAGGAGCTGCCCCTCGTGGAGAA GCAGAGCGCAGCCAGTTGCCCAGTCCTGGGCGGGAAGAGGATGGTCCTGACTGGCCACAA CTTCCTGCAGGACTCCAAGGTCGTTTTCGTGGAGAAAGCACCAGACGGCCACCACATCTG GGAAATGGAGGCGAAAACCGACGGAGACCTGTGCAAGCCGAATTCCTTGGTGGTCGAGAT CCCGCCTTTCCGCAACCAGAGAATCACCAGCCCCGTCCAGGTCAACTTCTACGTGTGCAA CGGGAAGAGAAAGAGGAGCCAGTACCAGCATTTCACCTACCTGCCTGCCAACGGTAACGC TCTCTTTCTAACCTTAAGCGCCGCGAACGGACCCGTGGGGTGCTTTTCTTAAAAGACGCT GTCGCTGTAAAGCAATGCGGTCGTGCTCTGCGCTTCAGCTGTTACCGTCCTGTTGGCAAG ATCATCTGTTCCTTTCCCCAAAGGGAAGCTTCGGTGTATTTTTCTTTATCCCTGTTGGGG TGGGGACTGCACTTGGGGATGACCCTGACCATTTGCTGGCTGTCTGCAGCTGTGCAGTGG CCAGGGAGGGAACGTGCAGCCCTCTGGGCCCAGCAGCTGAGGTGGCCTTGGTGTGAACTT GGACTCTGCAGGTGTTTTAAGTGGAGAAACAAATACTTATAATTATTTTGCAGGTGCCTT TAGAAATAAACCCTTGCTGTTAAG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
AAACTCTGACATTGAGCTTCGCAAAGGGGAGACGGACATTGGGCGGAAGAACACCAGAGT GAGGCTGGTCTTCCGCGTCCACATCCCGCAGCCCAACGGCCGGACACTGTCGCTGCAGGT GGCCTCCAACCCCATCGAGTGCTCCCAGCGCTCAGCCCAGGAGCTGCCCCTCGTGGAGAA GCAGAGCGCAGCCAGTTGCCCAGTCCTGGGCGGGAAGAGGATGGTCCTGACTGGCCACAA CTTCCTGCAGGACTCCAAGGTCGTTTTCGTGGAGAAAGCACCAGACGGCCACCACATCTG GGAAATGGAGGCGAAAACCGACGGAGACCTGTGCAAGCCGAATTCCTTGGTGGTCGAGAT CCCGCCTTTCCGCAACCAGAGAATCACCAGCCCCGTCCAGGTCAACTTCTACGTGTGCAA CGGGAAGAGAAAGAGGAGCCAGTACCAGCATTTCACCTACCTGCCTGCCAACGGTAACGC TCTCTTTCTAACCTTAAGCGCCGCGAACGGACCCGTGGGGTGCTTTTCTTAAAAGACGCT GTCGCTGTAAAGCAATGCGGTCGTGCTCTGCGCTTCAGCTGTTACCGTCCTGTTGGCAAG ATCATCTGTTCCTTTCCCCAAAGGGAAGCTTCGGTGTATTTTTCTTTATCCCTGTTGGGG TGGGGACTGCACTTGGGGATGACCCTGACCATTTGCTGGCTGTCTGCAGCTGTGCAGTGG CCAGGGAGGGAACGTGCAGCCCTCTGGGCCCAGCAGCTGAGGTGGCCTTGGTGTGAACTT GGACTCTGCAGGTGTTTTAAGTGGAGAAACAAATACTTATAATTATTTTGCAGGTGCCTT TAGAAATAAACCCTTGCTGTTAAG |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
197-303, + strand, RNAz p=0.914125 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
197-303, + strand, RNAz p=0.914125 |
Aligned organism(s): 41 entry(ies) | More info |
Aligned organism(s): 41 entry(ies) | Help | Less info |
2-143, gnl|bosTau2|chr13 (58633672-58633813) | |
2-143, gnl|canFam2|chr24 (40667839-40667957) | |
2-143, gnl|danRer3|chr6 (10636255-10636137) | |
2-143, gnl|dasNov1|scaffold_30768 (8363-8481) | |
2-143, gnl|echTel1|scaffold_285796 (35622-35740) | |
2-143, gnl|fr1|chrUn (40084445-40084328) | |
2-143, gnl|galGal2|chr20 (12811066-12810948) | |
2-143, gnl|hg17|chr20 (49523919-49524037) | |
2-143, gnl|Hg17|chr20 (49524065-49523924) | |
2-143, gnl|loxAfr1|scaffold_29858 (9956-9839) | |
2-143, gnl|mm7|chr2 (168327567-168327685) | |
2-143, gnl|Mm7|chr2 (168327713-168327572) | |
2-143, gnl|monDom2|scaffold_1 (163664022-163664140) | |
2-143, gnl|oryCun1|scaffold_101296 (4679-4783) | |
2-143, gnl|panTro1|chr21 (52286784-52286902) | |
2-143, gnl|rheMac2|chr18 (72755582-72755478) | |
2-143, gnl|rn3|chr3 (159616902-159617020) | |
2-143, gnl|tetNig1|chr9 (9749266-9749383) | |
2-143, gnl|xenTro1|scaffold_165 (1651964-1652082) | |
144-303, gnl|bosTau2|chr10 (11834661-11834820) | |
144-303, gnl|canFam2|chr8 (7348690-7348849) | |
144-303, gnl|danRer3|chr2 (34617599-34617748) | |
144-303, gnl|dasNov1|scaffold_11136 (3793-3959) | |
144-303, gnl|echTel1|scaffold_175005 (5701-5537) | |
144-303, gnl|fr1|chrUn (159336719-159336564) | |
144-303, gnl|galGal2|chr2 (56466052-56465898) | |
144-303, gnl|hg17|chr14 (23913365-23913531) | |
144-303, gnl|Hg17|chr14 (23913372-23913544) | |
144-303, gnl|loxAfr1|scaffold_9350 (1551-1717) | |
144-303, gnl|mm7|chr14 (50697802-50697968) | |
144-303, gnl|Mm7|chr14 (50697809-50697968) | |
144-303, gnl|monDom2|scaffold_12 (25331835-25331670) | |
144-303, gnl|oryCun1|scaffold_205858 (3805-3981) | |
144-303, gnl|panTro1|chr15 (22817603-22817769) | |
144-303, gnl|rheMac2|chr7 (87272654-87272820) | |
144-303, gnl|rn3|chr15 (33991026-33991192) | |
144-303, gnl|tetNig1|chr5 (2654539-2654688) | |
144-303, gnl|xenTro1|scaffold_339 (748274-748422) | |
340-852, gnl|bosTau2|chr24 (1005828-1006368) | |
340-852, gnl|Hg17|chr18 (75328437-75328973) | |
340-852, gnl|Mm7|chr18 (80936308-80935776) |
Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
2-143, gnl|bosTau2|chr13 (58633672-58633813) | |
2-143, gnl|canFam2|chr24 (40667839-40667957) | |
2-143, gnl|danRer3|chr6 (10636255-10636137) | |
2-143, gnl|dasNov1|scaffold_30768 (8363-8481) | |
2-143, gnl|echTel1|scaffold_285796 (35622-35740) | |
2-143, gnl|fr1|chrUn (40084445-40084328) | |
2-143, gnl|galGal2|chr20 (12811066-12810948) | |
2-143, gnl|hg17|chr20 (49523919-49524037) | |
2-143, gnl|Hg17|chr20 (49524065-49523924) | |
2-143, gnl|loxAfr1|scaffold_29858 (9956-9839) | |
2-143, gnl|mm7|chr2 (168327567-168327685) | |
2-143, gnl|Mm7|chr2 (168327713-168327572) | |
2-143, gnl|monDom2|scaffold_1 (163664022-163664140) | |
2-143, gnl|oryCun1|scaffold_101296 (4679-4783) | |
2-143, gnl|panTro1|chr21 (52286784-52286902) | |
2-143, gnl|rheMac2|chr18 (72755582-72755478) | |
2-143, gnl|rn3|chr3 (159616902-159617020) | |
2-143, gnl|tetNig1|chr9 (9749266-9749383) | |
2-143, gnl|xenTro1|scaffold_165 (1651964-1652082) | |
144-303, gnl|bosTau2|chr10 (11834661-11834820) | |
144-303, gnl|canFam2|chr8 (7348690-7348849) | |
144-303, gnl|danRer3|chr2 (34617599-34617748) | |
144-303, gnl|dasNov1|scaffold_11136 (3793-3959) | |
144-303, gnl|echTel1|scaffold_175005 (5701-5537) | |
144-303, gnl|fr1|chrUn (159336719-159336564) | |
144-303, gnl|galGal2|chr2 (56466052-56465898) | |
144-303, gnl|hg17|chr14 (23913365-23913531) | |
144-303, gnl|Hg17|chr14 (23913372-23913544) | |
144-303, gnl|loxAfr1|scaffold_9350 (1551-1717) | |
144-303, gnl|mm7|chr14 (50697802-50697968) | |
144-303, gnl|Mm7|chr14 (50697809-50697968) | |
144-303, gnl|monDom2|scaffold_12 (25331835-25331670) | |
144-303, gnl|oryCun1|scaffold_205858 (3805-3981) | |
144-303, gnl|panTro1|chr15 (22817603-22817769) | |
144-303, gnl|rheMac2|chr7 (87272654-87272820) | |
144-303, gnl|rn3|chr15 (33991026-33991192) | |
144-303, gnl|tetNig1|chr5 (2654539-2654688) | |
144-303, gnl|xenTro1|scaffold_339 (748274-748422) | |
340-852, gnl|bosTau2|chr24 (1005828-1006368) | |
340-852, gnl|Hg17|chr18 (75328437-75328973) | |
340-852, gnl|Mm7|chr18 (80936308-80935776) |
Expressed library(ies): 4 entry(ies) | More info |
Expressed library(ies): 4 entry(ies) | Help | Less info |
csp (0.161186) | |
eru (0.120048) | |
clu (0.119646) | |
nbm (0.0993246) |
Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
csp (0.161186) | |
eru (0.120048) | |
clu (0.119646) | |
nbm (0.0993246) |