Ss1.1-reru33c_f21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGTGGTACTGACTGTCCTCCATGGTGCTTCCCTTTTTTTGGGGGGGCCACACCTGCGG CATATTGAAGTTTCCAGGCTAGGGGTCTAATCAGAGCTGCAGCTGCTGGCCTATACCACA GCTCATGGCCACGGTGGATCCTTAACCCACTGAGCGAGGCCAGGGATGGACCCCACATCC TCATGGATACTAGTCGGGTTTGTAACCCGCTGAGCCACAATAGGAACTCCCCCTTTTCTT CCTTCTTAATGTGGGGAAGACCACAGGGCAGTGCCTGGCTCAGCACCCACCTACCCCTAA AGCTGGCTTCTTGCTCCAGAGAGAGAGCATTGGCCCATGTGCCAGTCTTGCCCTTTTGCC CAAAGGAGCCTGGTCTTCAGGGCTGTGTGGGAAACAAGTGCCTTCTCTGACTCTCATTGT AGGTGATGATAATCTCCTTAACCAGATTGTTGTCCTAGCCACTAACCCATTTTAATCCTC CGCCTCCCCCCACCCCCATTCTCCTGCCCAAAGTCTGTCCTCTGGTTCTGCTGGGCAGCA AGGTTATTTTGGGAGGGAGGAGGAATGTGGGACCATGTGAATAAAATAGCATTGAACACC GAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGTGGTACTGACTGTCCTCCATGGTGCTTCCCTTTTTTTGGGGGGGCCACACCTGCGG CATATTGAAGTTTCCAGGCTAGGGGTCTAATCAGAGCTGCAGCTGCTGGCCTATACCACA GCTCATGGCCACGGTGGATCCTTAACCCACTGAGCGAGGCCAGGGATGGACCCCACATCC TCATGGATACTAGTCGGGTTTGTAACCCGCTGAGCCACAATAGGAACTCCCCCTTTTCTT CCTTCTTAATGTGGGGAAGACCACAGGGCAGTGCCTGGCTCAGCACCCACCTACCCCTAA AGCTGGCTTCTTGCTCCAGAGAGAGAGCATTGGCCCATGTGCCAGTCTTGCCCTTTTGCC CAAAGGAGCCTGGTCTTCAGGGCTGTGTGGGAAACAAGTGCCTTCTCTGACTCTCATTGT AGGTGATGATAATCTCCTTAACCAGATTGTTGTCCTAGCCACTAACCCATTTTAATCCTC CGCCTCCCCCCACCCCCATTCTCCTGCCCAAAGTCTGTCCTCTGGTTCTGCTGGGCAGCA AGGTTATTTTGGGAGGGAGGAGGAATGTGGGACCATGTGAATAAAATAGCATTGAACACC GAAAAAAAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 241-339, - strand, RNAz p=0.818772 | |
| 390-490, - strand, RNAz p=0.733075 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 241-339, - strand, RNAz p=0.818772 | |
| 390-490, - strand, RNAz p=0.733075 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 286-393, + strand, RNAmicro p=0.950325 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC030206, - |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 241-528, gnl|bosTau2|chr5 (35040256-35039974) | |
| 241-528, gnl|canFam2|chr10 (3199768-3200167) | |
| 241-528, gnl|canFam2|chr10 (3199767-3200156) | |
| 241-528, gnl|dasNov1|scaffold_159503 (39846-40235) | |
| 241-528, gnl|dasNov1|scaffold_159503 (39845-40224) | |
| 241-528, gnl|echTel1|scaffold_221306 (1177-771) | |
| 241-528, gnl|echTel1|scaffold_221306 (1178-788) | |
| 241-528, gnl|hg17|chr12 (54515720-54516139) | |
| 241-528, gnl|Hg17|chr12 (54515910-54516192) | |
| 241-528, gnl|hg17|chr7 (78628779-78629118) | |
| 241-528, gnl|mm7|chr10 (128302286-128301962) | |
| 241-528, gnl|mm7|chr10 (128302287-128301973) | |
| 241-528, gnl|Mm7|chr10 (128302133-128301907) | |
| 241-528, gnl|monDom2|scaffold_234 (253867-254253) | |
| 241-528, gnl|monDom2|scaffold_234 (253863-254242) | |
| 241-528, gnl|oryCun1|scaffold_173893 (43066-42684) | |
| 241-528, gnl|oryCun1|scaffold_173893 (43067-42695) | |
| 241-528, gnl|panTro1|chr10 (55742944-55743363) | |
| 241-528, gnl|panTro1|chr6 (79810824-79811163) | |
| 241-528, gnl|rheMac2|chr11 (52896058-52896462) | |
| 241-528, gnl|rheMac2|chr3 (137939882-137939543) | |
| 241-528, gnl|rn3|chr7 (2100357-2100025) | |
| 241-528, gnl|rn3|chr7 (2100349-2100036) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-528, gnl|bosTau2|chr5 (35040256-35039974) | |
| 241-528, gnl|canFam2|chr10 (3199768-3200167) | |
| 241-528, gnl|canFam2|chr10 (3199767-3200156) | |
| 241-528, gnl|dasNov1|scaffold_159503 (39846-40235) | |
| 241-528, gnl|dasNov1|scaffold_159503 (39845-40224) | |
| 241-528, gnl|echTel1|scaffold_221306 (1177-771) | |
| 241-528, gnl|echTel1|scaffold_221306 (1178-788) | |
| 241-528, gnl|hg17|chr12 (54515720-54516139) | |
| 241-528, gnl|Hg17|chr12 (54515910-54516192) | |
| 241-528, gnl|hg17|chr7 (78628779-78629118) | |
| 241-528, gnl|mm7|chr10 (128302286-128301962) | |
| 241-528, gnl|mm7|chr10 (128302287-128301973) | |
| 241-528, gnl|Mm7|chr10 (128302133-128301907) | |
| 241-528, gnl|monDom2|scaffold_234 (253867-254253) | |
| 241-528, gnl|monDom2|scaffold_234 (253863-254242) | |
| 241-528, gnl|oryCun1|scaffold_173893 (43066-42684) | |
| 241-528, gnl|oryCun1|scaffold_173893 (43067-42695) | |
| 241-528, gnl|panTro1|chr10 (55742944-55743363) | |
| 241-528, gnl|panTro1|chr6 (79810824-79811163) | |
| 241-528, gnl|rheMac2|chr11 (52896058-52896462) | |
| 241-528, gnl|rheMac2|chr3 (137939882-137939543) | |
| 241-528, gnl|rn3|chr7 (2100357-2100025) | |
| 241-528, gnl|rn3|chr7 (2100349-2100036) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| eru (0.120048) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| eru (0.120048) | |
| nbm (0.0993246) |