Non-Coding RNA Search

Ss1.1-reru34c_d13.5

Sequence:


               
               GCCCACACATCCTCAGGACCTCTGGTCAAGGTTTCCAGATTGGTGACCCCTTAACCACCC
TCACCCTACATTGGTCCCAGCTCAGTGTGCCTAATACCGTGTGGTTGCCTGGGCTTGGCT
GGAGCCCCATGCCTGGCAACAGCCCTGCACAGGCCATAGAACCTCTTCCTGCCCACTTGG
TGCTATATCATCCAGTGACCCATCCAAAATGGGCCAAGCCCTGGCCAGCCTGGAGCCTGC
AATCCAGGGGAGAGAGTCCTATCCCAGCTTCTTCTGGCTTCAGTCCCTAGATTCTTCCCC
TGTGAGCTCTTTAGACCCCAGGTCTCCTGGGCCCAGCAATGCCCTGGCCAGGAAAGCAAG
TGACCCCTGCTGAAGCCAGAGTCCATCCTGGGCCGGGGCGGTCCCCTCCCACACCACAGC
AGTATTGCCTTCATCCCTGGGCAGTAGACCCGAGGGCAGTCCGCCATCTGGGGGTCCTGC
GAGCACAGTGGGCTCCAGGGGTTGCTCCCCTCGCTCCAAAAGGAGAGCCTCGCTTTAGTG
AGGAGCTGAGGGCACTGGGGGCCGACTCTTCGTAGCTTGAGTTCCTTCTGGCGATGGCAG
CAGCCGCAATGGTGGTGTCTTGAATAGACATATCGCTGCCTTCAAATGTGTGTGCAACGG
CCCGAGTTGTGTCACTGACAGGATCGTGACATTACAGAGAAATTGTGTTAGAGTCAACTT
TGCCTTGATAATTATTGTAAACACTATTCATTTTTTTCTTTTTTATTCACAAACTAAACC
CATCGGGAAATTATAAAGTTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCACACATCCTCAGGACCTCTGGTCAAGGTTTCCAGATTGGTGACCCCTTAACCACCC
TCACCCTACATTGGTCCCAGCTCAGTGTGCCTAATACCGTGTGGTTGCCTGGGCTTGGCT
GGAGCCCCATGCCTGGCAACAGCCCTGCACAGGCCATAGAACCTCTTCCTGCCCACTTGG
TGCTATATCATCCAGTGACCCATCCAAAATGGGCCAAGCCCTGGCCAGCCTGGAGCCTGC
AATCCAGGGGAGAGAGTCCTATCCCAGCTTCTTCTGGCTTCAGTCCCTAGATTCTTCCCC
TGTGAGCTCTTTAGACCCCAGGTCTCCTGGGCCCAGCAATGCCCTGGCCAGGAAAGCAAG
TGACCCCTGCTGAAGCCAGAGTCCATCCTGGGCCGGGGCGGTCCCCTCCCACACCACAGC
AGTATTGCCTTCATCCCTGGGCAGTAGACCCGAGGGCAGTCCGCCATCTGGGGGTCCTGC
GAGCACAGTGGGCTCCAGGGGTTGCTCCCCTCGCTCCAAAAGGAGAGCCTCGCTTTAGTG
AGGAGCTGAGGGCACTGGGGGCCGACTCTTCGTAGCTTGAGTTCCTTCTGGCGATGGCAG
CAGCCGCAATGGTGGTGTCTTGAATAGACATATCGCTGCCTTCAAATGTGTGTGCAACGG
CCCGAGTTGTGTCACTGACAGGATCGTGACATTACAGAGAAATTGTGTTAGAGTCAACTT
TGCCTTGATAATTATTGTAAACACTATTCATTTTTTTCTTTTTTATTCACAAACTAAACC
CATCGGGAAATTATAAAGTTATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               168-279, - strand, RNAz p=0.808847

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-279, - strand, RNAz p=0.808847

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-804, gnl|bosTau2|chr5 (65285205-65284404)
               

               
               11-804, gnl|Hg17|chr12 (1474476-1475351)
               

               
               11-804, gnl|Mm7|chr6 (119596774-119595946)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-804, gnl|bosTau2|chr5 (65285205-65284404)
               

               
               11-804, gnl|Hg17|chr12 (1474476-1475351)
               

               
               11-804, gnl|Mm7|chr6 (119596774-119595946)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               csk (0.140746)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	11-804, gnl\|bosTau2\|chr5 (65285205-65284404)
	11-804, gnl\|Hg17\|chr12 (1474476-1475351)
	11-804, gnl\|Mm7\|chr6 (119596774-119595946)