Ss1.1-reru34c_m15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTCGCCATCTTTCCTTCTTCCCCGCGCTACCAGCCATGAAGGTCGAGCTGTGCAGTTT CAGCGGGTACAAGATCTACCCAGGACACGGGAGGCGCTACGCCAGGACCGACGGGAAGGT TTTCCAATTTCTTAATGCAAAATGTGAGTCCGCGTTCCTTTCCAAGAGGAATCCTCGGCA GATCAACTGGACTGTTCTCTACAGAAGGAAGCACAAAAAGGGACAGTCGGAAGAGATTCA GAAGAAAAGAACCCGTCGTGCAGTCAAATTCCAGAGGGCCATAACTGGTGCATCCCTTGC TGACATAATGGCCAAGAGGAATCAGAAACCTGAAGTTAGGAAGGCTCAAAGAGAACAAGC TATCAGGGCTGCCAAGGAAGCAAAAAAAGCTAAGCAAGCATCTAAAAAGACAGCAATGGC TGCTGCAAAGGCTCCCACAAAGGCAGCACCTAAGCAAAAGATTGTGAAGCCTGTGAAGGT TTCTGCTCCCCGAGTTGGTGGAAAACGCTAAGTTGGAAGATCAGACTTTTAAATAAAGAT CTGACTATAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAACTACAAACTAAGGAATTTAAAAGCTATATGTATTTTATTTTTATTA TTTTCCTCTTTATAGCTGCATTTGTGGCATATATAAGTTCTCTCATGGTAGGCGCGGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTCGCCATCTTTCCTTCTTCCCCGCGCTACCAGCCATGAAGGTCGAGCTGTGCAGTTT CAGCGGGTACAAGATCTACCCAGGACACGGGAGGCGCTACGCCAGGACCGACGGGAAGGT TTTCCAATTTCTTAATGCAAAATGTGAGTCCGCGTTCCTTTCCAAGAGGAATCCTCGGCA GATCAACTGGACTGTTCTCTACAGAAGGAAGCACAAAAAGGGACAGTCGGAAGAGATTCA GAAGAAAAGAACCCGTCGTGCAGTCAAATTCCAGAGGGCCATAACTGGTGCATCCCTTGC TGACATAATGGCCAAGAGGAATCAGAAACCTGAAGTTAGGAAGGCTCAAAGAGAACAAGC TATCAGGGCTGCCAAGGAAGCAAAAAAAGCTAAGCAAGCATCTAAAAAGACAGCAATGGC TGCTGCAAAGGCTCCCACAAAGGCAGCACCTAAGCAAAAGATTGTGAAGCCTGTGAAGGT TTCTGCTCCCCGAGTTGGTGGAAAACGCTAAGTTGGAAGATCAGACTTTTAAATAAAGAT CTGACTATAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAACTACAAACTAAGGAATTTAAAAGCTATATGTATTTTATTTTTATTA TTTTCCTCTTTATAGCTGCATTTGTGGCATATATAAGTTCTCTCATGGTAGGCGCGGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 128-552, - strand, RNAz p=0.81734 | |
| 288-579, - strand, RNAz p=0.943916 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 128-552, - strand, RNAz p=0.81734 | |
| 288-579, - strand, RNAz p=0.943916 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 9-579, gnl|bosTau2|chr27 (24450914-24451477) | |
| 9-579, gnl|Mm7|chr9 (115713405-115712857) | |
| 229-367, gnl|bosTau2|chr11 (21707668-21707806) | |
| 229-367, gnl|canFam2|chr33 (11035917-11036074) | |
| 229-367, gnl|canFam2|chr33 (11035921-11036057) | |
| 229-367, gnl|danRer3|chrNA (62952454-62952608) | |
| 229-367, gnl|danRer3|chrNA (62952458-62952596) | |
| 229-367, gnl|dasNov1|scaffold_17761 (10654-10499) | |
| 229-367, gnl|dasNov1|scaffold_17761 (10646-10511) | |
| 229-367, gnl|echTel1|scaffold_170056 (6240-6101) | |
| 229-367, gnl|echTel1|scaffold_321519 (48275-48411) | |
| 229-367, gnl|fr1|chrUn (203894609-203894767) | |
| 229-367, gnl|fr1|chrUn (203894613-203894739) | |
| 229-367, gnl|galGal2|chr1 (79434490-79434656) | |
| 229-367, gnl|hg17|chr3 (102884301-102884459) | |
| 229-367, gnl|Hg17|chr3 (102884442-102884304) | |
| 229-367, gnl|hg17|chrX_random (212621-212757) | |
| 229-367, gnl|loxAfr1|scaffold_46620 (12608-12474) | |
| 229-367, gnl|loxAfr1|scaffold_46620 (12604-12476) | |
| 229-367, gnl|mm7|chr16 (55824716-55824558) | |
| 229-367, gnl|Mm7|chr16 (55824573-55824711) | |
| 229-367, gnl|mm7|chr9 (115713062-115713201) | |
| 229-367, gnl|monDom2|scaffold_16 (33841708-33841569) | |
| 229-367, gnl|monDom2|scaffold_50 (8718375-8718224) | |
| 229-367, gnl|oryCun1|scaffold_138926 (27589-27728) | |
| 229-367, gnl|oryCun1|scaffold_187422 (4454-4621) | |
| 229-367, gnl|panTro1|chr2 (104363775-104363933) | |
| 229-367, gnl|panTro1|chrX (3652090-3651954) | |
| 229-367, gnl|rheMac2|chr2 (21872113-21872271) | |
| 229-367, gnl|rheMac2|chrX (1566649-1566513) | |
| 229-367, gnl|rn3|chr11 (45688224-45688382) | |
| 229-367, gnl|rn3|chr5 (25298891-25298752) | |
| 229-367, gnl|tetNig1|chr2 (9270135-9269991) | |
| 229-367, gnl|tetNig1|chr2 (9270131-9269992) | |
| 229-367, gnl|xenTro1|scaffold_9206 (7561-7719) | |
| 429-552, gnl|bosTau2|chr11 (21709537-21709660) | |
| 429-552, gnl|Hg17|chr3 (102882751-102882628) | |
| 429-552, gnl|Mm7|chr16 (55826373-55826496) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-579, gnl|bosTau2|chr27 (24450914-24451477) | |
| 9-579, gnl|Mm7|chr9 (115713405-115712857) | |
| 229-367, gnl|bosTau2|chr11 (21707668-21707806) | |
| 229-367, gnl|canFam2|chr33 (11035917-11036074) | |
| 229-367, gnl|canFam2|chr33 (11035921-11036057) | |
| 229-367, gnl|danRer3|chrNA (62952454-62952608) | |
| 229-367, gnl|danRer3|chrNA (62952458-62952596) | |
| 229-367, gnl|dasNov1|scaffold_17761 (10654-10499) | |
| 229-367, gnl|dasNov1|scaffold_17761 (10646-10511) | |
| 229-367, gnl|echTel1|scaffold_170056 (6240-6101) | |
| 229-367, gnl|echTel1|scaffold_321519 (48275-48411) | |
| 229-367, gnl|fr1|chrUn (203894609-203894767) | |
| 229-367, gnl|fr1|chrUn (203894613-203894739) | |
| 229-367, gnl|galGal2|chr1 (79434490-79434656) | |
| 229-367, gnl|hg17|chr3 (102884301-102884459) | |
| 229-367, gnl|Hg17|chr3 (102884442-102884304) | |
| 229-367, gnl|hg17|chrX_random (212621-212757) | |
| 229-367, gnl|loxAfr1|scaffold_46620 (12608-12474) | |
| 229-367, gnl|loxAfr1|scaffold_46620 (12604-12476) | |
| 229-367, gnl|mm7|chr16 (55824716-55824558) | |
| 229-367, gnl|Mm7|chr16 (55824573-55824711) | |
| 229-367, gnl|mm7|chr9 (115713062-115713201) | |
| 229-367, gnl|monDom2|scaffold_16 (33841708-33841569) | |
| 229-367, gnl|monDom2|scaffold_50 (8718375-8718224) | |
| 229-367, gnl|oryCun1|scaffold_138926 (27589-27728) | |
| 229-367, gnl|oryCun1|scaffold_187422 (4454-4621) | |
| 229-367, gnl|panTro1|chr2 (104363775-104363933) | |
| 229-367, gnl|panTro1|chrX (3652090-3651954) | |
| 229-367, gnl|rheMac2|chr2 (21872113-21872271) | |
| 229-367, gnl|rheMac2|chrX (1566649-1566513) | |
| 229-367, gnl|rn3|chr11 (45688224-45688382) | |
| 229-367, gnl|rn3|chr5 (25298891-25298752) | |
| 229-367, gnl|tetNig1|chr2 (9270135-9269991) | |
| 229-367, gnl|tetNig1|chr2 (9270131-9269992) | |
| 229-367, gnl|xenTro1|scaffold_9206 (7561-7719) | |
| 429-552, gnl|bosTau2|chr11 (21709537-21709660) | |
| 429-552, gnl|Hg17|chr3 (102882751-102882628) | |
| 429-552, gnl|Mm7|chr16 (55826373-55826496) |
| Expressed library(ies): 88 entry(ies) | More info |
| Expressed library(ies): 88 entry(ies) | Help | Less info |
| elu (4.23892) | |
| mcp (3.92491) | |
| eje (3.16268) | |
| nca (3.01122) | |
| hlv (2.36736) | |
| nep (2.2071) | |
| ssp (2.0328) | |
| aor (1.95274) | |
| ova (1.93698) | |
| che (1.9084) | |
| thg (1.90186) | |
| ese (1.89753) | |
| cut (1.86916) | |
| med (1.86003) | |
| sag (1.82715) | |
| sto (1.79824) | |
| nco (1.77907) | |
| fty (1.7584) | |
| nje (1.6592) | |
| ecc (1.61049) | |
| nmm (1.59363) | |
| ill (1.58033) | |
| duo (1.55521) | |
| cag (1.51194) | |
| bla (1.49217) | |
| fat (1.47427) | |
| eye (1.36402) | |
| isp (1.35338) | |
| csk (1.26671) | |
| mas (1.26183) | |
| amn (1.25313) | |
| ton (1.2285) | |
| hea (1.22699) | |
| eru (1.20048) | |
| fcc (1.18671) | |
| mgp (1.1534) | |
| ece (1.14653) | |
| lnt (1.13847) | |
| fce (1.08637) | |
| sin (1.04969) | |
| cki (0.991408) | |
| cst (0.980255) | |
| col (0.975039) | |
| csp (0.967118) | |
| cly (0.965135) | |
| sme (0.91631) | |
| jca (0.911681) | |
| nbm (0.893921) | |
| fbs (0.876732) | |
| pty (0.856287) | |
| ebs (0.828108) | |
| lyg (0.798616) | |
| cov (0.792917) | |
| nlu (0.766724) | |
| bfe (0.749288) | |
| mgm (0.721371) | |
| cbe (0.717703) | |
| rec (0.692281) | |
| spc (0.680195) | |
| cje (0.660939) | |
| nms (0.641574) | |
| mga (0.64082) | |
| sug (0.636456) | |
| eep (0.61282) | |
| eli (0.607257) | |
| pgl (0.592417) | |
| ute (0.531138) | |
| cli (0.458435) | |
| fli (0.405762) | |
| jej (0.395687) | |
| gul (0.355177) | |
| vin (0.332557) | |
| fco (0.314416) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cte (0.29274) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| kid (0.259471) | |
| ret (0.257467) | |
| pan (0.23596) | |
| tes (0.207814) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| pla (0.133672) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 88 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (4.23892) | |
| mcp (3.92491) | |
| eje (3.16268) | |
| nca (3.01122) | |
| hlv (2.36736) | |
| nep (2.2071) | |
| ssp (2.0328) | |
| aor (1.95274) | |
| ova (1.93698) | |
| che (1.9084) | |
| thg (1.90186) | |
| ese (1.89753) | |
| cut (1.86916) | |
| med (1.86003) | |
| sag (1.82715) | |
| sto (1.79824) | |
| nco (1.77907) | |
| fty (1.7584) | |
| nje (1.6592) | |
| ecc (1.61049) | |
| nmm (1.59363) | |
| ill (1.58033) | |
| duo (1.55521) | |
| cag (1.51194) | |
| bla (1.49217) | |
| fat (1.47427) | |
| eye (1.36402) | |
| isp (1.35338) | |
| csk (1.26671) | |
| mas (1.26183) | |
| amn (1.25313) | |
| ton (1.2285) | |
| hea (1.22699) | |
| eru (1.20048) | |
| fcc (1.18671) | |
| mgp (1.1534) | |
| ece (1.14653) | |
| lnt (1.13847) | |
| fce (1.08637) | |
| sin (1.04969) | |
| cki (0.991408) | |
| cst (0.980255) | |
| col (0.975039) | |
| csp (0.967118) | |
| cly (0.965135) | |
| sme (0.91631) | |
| jca (0.911681) | |
| nbm (0.893921) | |
| fbs (0.876732) | |
| pty (0.856287) | |
| ebs (0.828108) | |
| lyg (0.798616) | |
| cov (0.792917) | |
| nlu (0.766724) | |
| bfe (0.749288) | |
| mgm (0.721371) | |
| cbe (0.717703) | |
| rec (0.692281) | |
| spc (0.680195) | |
| cje (0.660939) | |
| nms (0.641574) | |
| mga (0.64082) | |
| sug (0.636456) | |
| eep (0.61282) | |
| eli (0.607257) | |
| pgl (0.592417) | |
| ute (0.531138) | |
| cli (0.458435) | |
| fli (0.405762) | |
| jej (0.395687) | |
| gul (0.355177) | |
| vin (0.332557) | |
| fco (0.314416) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cte (0.29274) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| kid (0.259471) | |
| ret (0.257467) | |
| pan (0.23596) | |
| tes (0.207814) | |
| fhi (0.169578) | |
| lin (0.145603) | |
| pla (0.133672) | |
| cty (0.10408) | |
| ldo (0.0970026) |