Non-Coding RNA Search

Ss1.1-reru34c_o15.5

Sequence:


               
               GTTTGATGCTGGGCAAGTCATTGGACCTTTCTGTGCCTCAGTTTCCTCATCTGTAAAATG
GGGCTAACAGTGTTTACCTACCTCATAGGATTTAATGATGTCAATCTCCTCACTGGAGGC
CTTATCCCTGCTTGGAGCCCACGAGGTGCCAACCCCTCAGAACTATAAGCCTTGTTATGC
CTAACCTCTGAGGGCTTCTAATCCCACTTGTTAGGGATAGAAGGAGCCTCGAAATTGGGG
AAATTCTGAATGCCCTGGTTATTGGGAAAGTTCCAGGGCACTGATGGGGTTTAACCTGGT
TAAATGGAGGGCCTAAGGAACCCTGTAGCTTCAATCATGTATGATAACTCAGTGCCTAGG
CCCCAACCTGGATTATGAAGAAGTAGGGGAGAGGTAGCCTGGGCCACATCCCAGCCGAAT
GCGTGTTATGTTCCTTTTGTGAACTAACCGCATTAGTTGTAGGGGCTGTGCAGAGGCAGC
GTGGTCTGCTGCCATGAGGTCAGTCTTTGCTTGTTCACATACACCGTCAGACCATCACCT
TGTCCTGATCTATATACTAAATTTTTGTTTTTTTCAAGTTAAGTCAGTTCTAATTACCCA
AGTAATGTACGAATCCATTTTCTTTTTAAGAAATTAAATTGTTACAAATAAGTATAGCTT
CATTTGGCTACCATTCCCCCTCCCCCTCTTAATTACTGTCATGTCTGTTGTACATCCATC
TCGACTTTAGGACTTTTACACATGAGTTCATTGAAAACATTGTGTTCAATGCAGATGGTA
TATTGAATCATTCTGCAGTTTGCTTTCTTTGCTTAGCAATGTTTTAGAGATCTATGCATG
TTGCTAAATGTAGATATAGTTCATCCTTTGTAATTGTTACATAGATTGTCATGATGTGAC
TCTGCCTCATTTTATTTACCCATTTCTCTTATGATGGACAATAAGACTGTTTTCTGTTTT
TGCTGTTATAGGATACTACACAGCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCA
CGCGCATGTGTGAATGAGAGAAAATTTACCTAGGGTTGATTCCTAGAAGTTGAATTGAAG
AGTCATAGGCTATTTATATTTTTGTTTTTAATAGATACTTCCAAATTGCCCTCCTGTACT
ATTTACTCAATATTTTTCTTGAGGTTGTCTTAGCTCTAATATTGTCATCTACTTCAGTTT
CATCCTAAGTAGTAATAACCGTGAAACCATGGGTTTGATGTGCTAAGTATGTATTTTTCT
AATACATATTAAAAGGCATAACTATCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGATGCTGGGCAAGTCATTGGACCTTTCTGTGCCTCAGTTTCCTCATCTGTAAAATG
GGGCTAACAGTGTTTACCTACCTCATAGGATTTAATGATGTCAATCTCCTCACTGGAGGC
CTTATCCCTGCTTGGAGCCCACGAGGTGCCAACCCCTCAGAACTATAAGCCTTGTTATGC
CTAACCTCTGAGGGCTTCTAATCCCACTTGTTAGGGATAGAAGGAGCCTCGAAATTGGGG
AAATTCTGAATGCCCTGGTTATTGGGAAAGTTCCAGGGCACTGATGGGGTTTAACCTGGT
TAAATGGAGGGCCTAAGGAACCCTGTAGCTTCAATCATGTATGATAACTCAGTGCCTAGG
CCCCAACCTGGATTATGAAGAAGTAGGGGAGAGGTAGCCTGGGCCACATCCCAGCCGAAT
GCGTGTTATGTTCCTTTTGTGAACTAACCGCATTAGTTGTAGGGGCTGTGCAGAGGCAGC
GTGGTCTGCTGCCATGAGGTCAGTCTTTGCTTGTTCACATACACCGTCAGACCATCACCT
TGTCCTGATCTATATACTAAATTTTTGTTTTTTTCAAGTTAAGTCAGTTCTAATTACCCA
AGTAATGTACGAATCCATTTTCTTTTTAAGAAATTAAATTGTTACAAATAAGTATAGCTT
CATTTGGCTACCATTCCCCCTCCCCCTCTTAATTACTGTCATGTCTGTTGTACATCCATC
TCGACTTTAGGACTTTTACACATGAGTTCATTGAAAACATTGTGTTCAATGCAGATGGTA
TATTGAATCATTCTGCAGTTTGCTTTCTTTGCTTAGCAATGTTTTAGAGATCTATGCATG
TTGCTAAATGTAGATATAGTTCATCCTTTGTAATTGTTACATAGATTGTCATGATGTGAC
TCTGCCTCATTTTATTTACCCATTTCTCTTATGATGGACAATAAGACTGTTTTCTGTTTT
TGCTGTTATAGGATACTACACAGCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCA
CGCGCATGTGTGAATGAGAGAAAATTTACCTAGGGTTGATTCCTAGAAGTTGAATTGAAG
AGTCATAGGCTATTTATATTTTTGTTTTTAATAGATACTTCCAAATTGCCCTCCTGTACT
ATTTACTCAATATTTTTCTTGAGGTTGTCTTAGCTCTAATATTGTCATCTACTTCAGTTT
CATCCTAAGTAGTAATAACCGTGAAACCATGGGTTTGATGTGCTAAGTATGTATTTTTCT
AATACATATTAAAAGGCATAACTATCAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-319, + strand, RNAz p=0.968927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-319, + strand, RNAz p=0.968927

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006306, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006306, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-1002, gnl|bosTau2|chrX (544072-543106)
               

               
               1-1002, gnl|Hg17|chrX (53289182-53288176)
               


               
               1018-1294, gnl|bosTau2|chrX (543128-542852)
               

               
               1018-1294, gnl|Hg17|chrX (53288214-53287914)
               

               
               1018-1294, gnl|Mm7|chrX (146822065-146822338)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1002, gnl|bosTau2|chrX (544072-543106)
               

               
               1-1002, gnl|Hg17|chrX (53289182-53288176)
               


               
               1018-1294, gnl|bosTau2|chrX (543128-542852)
               

               
               1018-1294, gnl|Hg17|chrX (53288214-53287914)
               

               
               1018-1294, gnl|Mm7|chrX (146822065-146822338)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ova (0.387397)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

	1-1002, gnl\|bosTau2\|chrX (544072-543106)
	1-1002, gnl\|Hg17\|chrX (53289182-53288176)

	1018-1294, gnl\|bosTau2\|chrX (543128-542852)
	1018-1294, gnl\|Hg17\|chrX (53288214-53287914)
	1018-1294, gnl\|Mm7\|chrX (146822065-146822338)

	ova (0.387397)
	lin (0.291206)
	spl (0.286369)
	mgp (0.230681)
	nms (0.213858)
	nep (0.183925)
	sag (0.182715)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	eye (0.170503)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	eru (0.120048)