Non-Coding RNA Search

Ss1.1-reru35c_a4.5

Sequence:


               
               TTTGAAAATGACAAGCAAGCAGGGGAGCACAGTTGGCTGAGGCCATGAAATGAGAAACGG
AGGGCGCGGACAAGGGCACAGCAGTGGGGTCTCGCGTCCTGCCTTCAGGGGGGGCACCTG
GGTGGTTCAGGTCCTGGCTGCTGTCCTCCTGGCCCCCGGCTCTCCTGGGTGACGGCCTCG
CGTTGCTCCCAGTACCCGCACGCGGTGGGGAAGAACACGCTGCTCATCGCGGGGCTGCAG
GCCCGGAACAACGCCCGTGTCATCTTCAGCGGCTCCCTCGACTTCTTCAGCGATGCCTTC
TTCAACTCCGCGGTGCAGAAGGCCACGCCTGGCTCCCAGAGGTAGTGGGGGGGCTTGAGG
GTGGTCTGGGCGGTGAGTCTGTGCAGACCCAGCTCTCTCCTGGGGAGGAAGGAGCCTTTG
AGCCAGAAGTGTCCAAGGCTGAGTATCTTCCGGTGCTTTGCAATTATTTGAACTTTATGT
GCGGCCTCCAGGCAGAAAGGCGCGCGTTTAGTTGATCCTGGTGGATAGATTGGTTTGGAG
CCCCAGGAGCCCTTGGAAAGAAGTGGGCTCTGCTGCTGCAGCCTCCCCCATTTCCCTCCC
GCAGGTATCCCCAGACAGGCAACTATGAGCTCGCCGTGGCCCTCTCCCGCTGGGTGTTCA
AGGAGGAGGGTGTCCTCCGAGTGGGGCCTGTGTCCCACCATCGGGTGGGCGAGAAAGCCC
CACCCAACGCCTACACCGTCACTGACCTAGTCGTAAGAGCTTCTGGGAGCGGGAGGGCCC
TGGGGTCTCGTCCAAGTTGATTCTGCTCAAAAGCACTTAGCGCCACTCGTGTGTGGGGCC
TAAACAAGGCTGAATAGGTCCTCTTCACCCTAAGAGTCAGTGGAGGAGCAGAGCCTGGCA
CGTAAACACGCGTCCTGAGAGGCAGCCTTCTGGAGGTGTGGGTGTGGGTGTGGGTGTGGG
TGTGGGTGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAAAATGACAAGCAAGCAGGGGAGCACAGTTGGCTGAGGCCATGAAATGAGAAACGG
AGGGCGCGGACAAGGGCACAGCAGTGGGGTCTCGCGTCCTGCCTTCAGGGGGGGCACCTG
GGTGGTTCAGGTCCTGGCTGCTGTCCTCCTGGCCCCCGGCTCTCCTGGGTGACGGCCTCG
CGTTGCTCCCAGTACCCGCACGCGGTGGGGAAGAACACGCTGCTCATCGCGGGGCTGCAG
GCCCGGAACAACGCCCGTGTCATCTTCAGCGGCTCCCTCGACTTCTTCAGCGATGCCTTC
TTCAACTCCGCGGTGCAGAAGGCCACGCCTGGCTCCCAGAGGTAGTGGGGGGGCTTGAGG
GTGGTCTGGGCGGTGAGTCTGTGCAGACCCAGCTCTCTCCTGGGGAGGAAGGAGCCTTTG
AGCCAGAAGTGTCCAAGGCTGAGTATCTTCCGGTGCTTTGCAATTATTTGAACTTTATGT
GCGGCCTCCAGGCAGAAAGGCGCGCGTTTAGTTGATCCTGGTGGATAGATTGGTTTGGAG
CCCCAGGAGCCCTTGGAAAGAAGTGGGCTCTGCTGCTGCAGCCTCCCCCATTTCCCTCCC
GCAGGTATCCCCAGACAGGCAACTATGAGCTCGCCGTGGCCCTCTCCCGCTGGGTGTTCA
AGGAGGAGGGTGTCCTCCGAGTGGGGCCTGTGTCCCACCATCGGGTGGGCGAGAAAGCCC
CACCCAACGCCTACACCGTCACTGACCTAGTCGTAAGAGCTTCTGGGAGCGGGAGGGCCC
TGGGGTCTCGTCCAAGTTGATTCTGCTCAAAAGCACTTAGCGCCACTCGTGTGTGGGGCC
TAAACAAGGCTGAATAGGTCCTCTTCACCCTAAGAGTCAGTGGAGGAGCAGAGCCTGGCA
CGTAAACACGCGTCCTGAGAGGCAGCCTTCTGGAGGTGTGGGTGTGGGTGTGGGTGTGGG
TGTGGGTGTGGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               317-459, + strand, RNAz p=0.994328
               

               
               614-773, + strand, RNAz p=0.94014

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               317-459, + strand, RNAz p=0.994328
               

               
               614-773, + strand, RNAz p=0.94014

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               157-459, gnl|bosTau2|chr2 (83813237-83812949)
               

               
               157-459, gnl|Hg17|chr1 (20726202-20725895)
               


               
               575-960, gnl|bosTau2|chr17 (42020296-42019909)
               

               
               575-960, gnl|Hg17|chr1 (20725598-20725201)
               

               
               575-960, gnl|Mm7|chr4 (137689254-137689583)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-459, gnl|bosTau2|chr2 (83813237-83812949)
               

               
               157-459, gnl|Hg17|chr1 (20726202-20725895)
               


               
               575-960, gnl|bosTau2|chr17 (42020296-42019909)
               

               
               575-960, gnl|Hg17|chr1 (20725598-20725201)
               

               
               575-960, gnl|Mm7|chr4 (137689254-137689583)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               lnt (0.142308)
               

               
               eru (0.120048)

	317-459, + strand, RNAz p=0.994328
	614-773, + strand, RNAz p=0.94014

	157-459, gnl\|bosTau2\|chr2 (83813237-83812949)
	157-459, gnl\|Hg17\|chr1 (20726202-20725895)

	575-960, gnl\|bosTau2\|chr17 (42020296-42019909)
	575-960, gnl\|Hg17\|chr1 (20725598-20725201)
	575-960, gnl\|Mm7\|chr4 (137689254-137689583)