Ss1.1-rese04c_l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTATGACGGGGAAAACTACCTGCCCGTCCACCTCCAGGGCTTTGAGCCACCAGGCTACGA GCGGACTGAGCTGAGTCTGAGCCCTGAGGCCCGAGTGCCCCTGGAAGATAAGGGGCTGGG GACCCCCGAGCACTGCCCAGGCCAGTGCCTGCCGTGGGCATGTAAGGTGTGTAAGAGGAA GTCCGTGTCTGTGGACCGTCGGCGGGCCGCCACGCTGAGGGAGAAGCGCAGGCTCAAGAA GGTGAATGAGGCCTTTGAGGCCCTGAAGAGGAGCACCCTGCTCAACCCCAACCAGCGGCT GCCCAAGGTGGAGATCCTGCGCAGCGCCATCCAGTACATCGAGCGCCTGCAGGCCCTGCT CAGCTCCCTCAACCAGGAGGAGCGAGACCTCCGCTACCGAGGCGGGGGCGGGCCGCAGCC AGGGGTGCCCAGTGAATGCAGTTCCCACAGCGCCTCCTGCAGTCCAGAATGGGGCAGTGC ACTGGAGTTCGGCCCCAACCCAGGGGATCATCTGCTCACAGCTGACCCTACAGATGCCCA CAATCTGCACTCCCTCACCTCCATCGTGGACAGCATCACAGTGGAGGATGTGGCTGTGGC CTTCCCAGATGAAACCATGCCCAACTGAGACTGTCTGCCAGGATGGGTGTGCGTGAGAGC CCCCCCCAAGGCTGGCCACAGACGGCACCACTTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTATGACGGGGAAAACTACCTGCCCGTCCACCTCCAGGGCTTTGAGCCACCAGGCTACGA GCGGACTGAGCTGAGTCTGAGCCCTGAGGCCCGAGTGCCCCTGGAAGATAAGGGGCTGGG GACCCCCGAGCACTGCCCAGGCCAGTGCCTGCCGTGGGCATGTAAGGTGTGTAAGAGGAA GTCCGTGTCTGTGGACCGTCGGCGGGCCGCCACGCTGAGGGAGAAGCGCAGGCTCAAGAA GGTGAATGAGGCCTTTGAGGCCCTGAAGAGGAGCACCCTGCTCAACCCCAACCAGCGGCT GCCCAAGGTGGAGATCCTGCGCAGCGCCATCCAGTACATCGAGCGCCTGCAGGCCCTGCT CAGCTCCCTCAACCAGGAGGAGCGAGACCTCCGCTACCGAGGCGGGGGCGGGCCGCAGCC AGGGGTGCCCAGTGAATGCAGTTCCCACAGCGCCTCCTGCAGTCCAGAATGGGGCAGTGC ACTGGAGTTCGGCCCCAACCCAGGGGATCATCTGCTCACAGCTGACCCTACAGATGCCCA CAATCTGCACTCCCTCACCTCCATCGTGGACAGCATCACAGTGGAGGATGTGGCTGTGGC CTTCCCAGATGAAACCATGCCCAACTGAGACTGTCTGCCAGGATGGGTGTGCGTGAGAGC CCCCCCCAAGGCTGGCCACAGACGGCACCACTTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-279, + strand, RNAz p=0.80986 | |
| 579-696, - strand, RNAz p=0.729253 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-279, + strand, RNAz p=0.80986 | |
| 579-696, - strand, RNAz p=0.729253 |
| Aligned organism(s): 9 entry(ies) | More info |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
| 1-426, gnl|bosTau2|chr16 (126927-126502) | |
| 1-426, gnl|Hg17|chr1 (199786699-199786274) | |
| 1-426, gnl|Mm7|chr1 (134179888-134180313) | |
| 140-360, gnl|bosTau2|chr15 (19663898-19663678) | |
| 140-360, gnl|Hg17|chr11 (17698176-17698396) | |
| 140-360, gnl|Mm7|chr7 (42553144-42553364) | |
| 506-696, gnl|bosTau2|chr16 (125033-124846) | |
| 506-696, gnl|Hg17|chr1 (199784817-199784630) | |
| 506-696, gnl|Mm7|chr1 (134181458-134181644) |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-426, gnl|bosTau2|chr16 (126927-126502) | |
| 1-426, gnl|Hg17|chr1 (199786699-199786274) | |
| 1-426, gnl|Mm7|chr1 (134179888-134180313) | |
| 140-360, gnl|bosTau2|chr15 (19663898-19663678) | |
| 140-360, gnl|Hg17|chr11 (17698176-17698396) | |
| 140-360, gnl|Mm7|chr7 (42553144-42553364) | |
| 506-696, gnl|bosTau2|chr16 (125033-124846) | |
| 506-696, gnl|Hg17|chr1 (199784817-199784630) | |
| 506-696, gnl|Mm7|chr1 (134181458-134181644) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| eru (0.120048) |