Non-Coding RNA Search

Ss1.1-rese05c_k24.5

Sequence:


               
               AAGAAGTAGGAGTTGTCCATGTCCACCATCCCGTCTTCTGTGATCCCAATCTTGATCCCA
GACAGTATAAAATGTGCTTGGGGTCCAAAGCATCAACCTATGGGTCCACACAGCAGTTGG
CTGAAATGTGGCTAGAAAAAAATGACCCGAATTACAGGAGAAGCAGCAATAATAACGGCT
CAGTGAGGACAGCCTAATGTCCAGCTCTGCTGGAAAAGACACTTTTAATTATCTAATTTA
TTTTTCAAACATGTTTTGTATGATCCGTTTTTGAAGTTCATACAAGGATATATTTTACAC
GTGATTTTCTTACAAGGACTCCTTGAAGACCGAGCTTTTTGAACAAAAATGTGATCATGT
TTGCCTTTGAACACATTTTCTTGCTGAACATCATGTAGCAGACCTGCTTAATTATGACTT
GAAGTGTACCCGATGAACAAAACTTTTTTTTTTTTTTTTAATATCTCTAGACCTCTTTCC
TATAGTCCTAAGGCAGAAAACACGGATGTTCCCGCAAAGTTTTATTGTAACAAAACACTG
TAACTCTGGTAAATGTTTTGTTGTAACTGTTAACTTTGCACAGATTCTACCTTTTGTCTT
TTTTACAACAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGTAGGAGTTGTCCATGTCCACCATCCCGTCTTCTGTGATCCCAATCTTGATCCCA
GACAGTATAAAATGTGCTTGGGGTCCAAAGCATCAACCTATGGGTCCACACAGCAGTTGG
CTGAAATGTGGCTAGAAAAAAATGACCCGAATTACAGGAGAAGCAGCAATAATAACGGCT
CAGTGAGGACAGCCTAATGTCCAGCTCTGCTGGAAAAGACACTTTTAATTATCTAATTTA
TTTTTCAAACATGTTTTGTATGATCCGTTTTTGAAGTTCATACAAGGATATATTTTACAC
GTGATTTTCTTACAAGGACTCCTTGAAGACCGAGCTTTTTGAACAAAAATGTGATCATGT
TTGCCTTTGAACACATTTTCTTGCTGAACATCATGTAGCAGACCTGCTTAATTATGACTT
GAAGTGTACCCGATGAACAAAACTTTTTTTTTTTTTTTTAATATCTCTAGACCTCTTTCC
TATAGTCCTAAGGCAGAAAACACGGATGTTCCCGCAAAGTTTTATTGTAACAAAACACTG
TAACTCTGGTAAATGTTTTGTTGTAACTGTTAACTTTGCACAGATTCTACCTTTTGTCTT
TTTTACAACAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.969029

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.969029

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               99-234, - strand, RNAmicro p=0.996391

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               99-234, - strand, RNAmicro p=0.996391

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014918, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014918, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr21 (2824492-2825101)
               

               
               1-612, gnl|Hg17|chr15 (99535312-99534690)
               

               
               1-612, gnl|Mm7|chr7 (62030195-62030875)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr21 (2824492-2825101)
               

               
               1-612, gnl|Hg17|chr15 (99535312-99534690)
               

               
               1-612, gnl|Mm7|chr7 (62030195-62030875)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               cty (0.10408)

	1-612, gnl\|bosTau2\|chr21 (2824492-2825101)
	1-612, gnl\|Hg17\|chr15 (99535312-99534690)
	1-612, gnl\|Mm7\|chr7 (62030195-62030875)