Non-Coding RNA Search

Ss1.1-rese06c_k5.5

Sequence:


               
               ACAGTTCAGCTTTAACGGAGACAGCTGTCTGTGGTTCTCTCAAGACAGAATGATTTAGGA
AATTTTTCGTTGTTGGTTTCTTATAAAACTAGTATGTGTTAATTTTATGATGTTTTGAGG
GAAGTTTTAACTCCTGATGGTCTCTGGGTAACTGAAACTGATGTCTTGGAAGATCACTGA
GGGGTGGGGAAGGGGGACTACGGCAGTTTGTTGAGTTTACAAACAAACATTAAACCAAAG
GCTGTGGGAAAACAGCTTCCCAGCCCCAGGGAGGCTCGGATCTGGGGCGGTCACTTGAAG
CTGTATCCTGCAACCATGCTGTGCCTTCTTACCATTAGCTTTTAGTAACATCTTTCCATT
GGCAGTTTCAATGGGAAATTGCCATGACTGCCATTTGGGGATTGGAGTTGTGCTTTTTTT
TTTCCTTTATTTCTTTGGCTTCTCTCTCCTATTCCACTGAACAAAGCAAGTAAGGGGGGA
AATTTGGCCTCAGTGTTGAATTGCTAATTCCCCTACCTAGCTTCTCCCCAGGGATCCAAA
AATCACTCCAGGGAGCTAGCTCTGGACCTGGTCATTTTTATCCTGGTTGTGATTTTGTGT
AAGCCCTTCTTTGATGTACACTCGAAGAGATGTGCACTTGTCACTATAAGAAAAAATATT
AAAATCGAAACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTTCAGCTTTAACGGAGACAGCTGTCTGTGGTTCTCTCAAGACAGAATGATTTAGGA
AATTTTTCGTTGTTGGTTTCTTATAAAACTAGTATGTGTTAATTTTATGATGTTTTGAGG
GAAGTTTTAACTCCTGATGGTCTCTGGGTAACTGAAACTGATGTCTTGGAAGATCACTGA
GGGGTGGGGAAGGGGGACTACGGCAGTTTGTTGAGTTTACAAACAAACATTAAACCAAAG
GCTGTGGGAAAACAGCTTCCCAGCCCCAGGGAGGCTCGGATCTGGGGCGGTCACTTGAAG
CTGTATCCTGCAACCATGCTGTGCCTTCTTACCATTAGCTTTTAGTAACATCTTTCCATT
GGCAGTTTCAATGGGAAATTGCCATGACTGCCATTTGGGGATTGGAGTTGTGCTTTTTTT
TTTCCTTTATTTCTTTGGCTTCTCTCTCCTATTCCACTGAACAAAGCAAGTAAGGGGGGA
AATTTGGCCTCAGTGTTGAATTGCTAATTCCCCTACCTAGCTTCTCCCCAGGGATCCAAA
AATCACTCCAGGGAGCTAGCTCTGGACCTGGTCATTTTTATCCTGGTTGTGATTTTGTGT
AAGCCCTTCTTTGATGTACACTCGAAGAGATGTGCACTTGTCACTATAAGAAAAAATATT
AAAATCGAAACG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               190-424, + strand, RNAz p=0.908413

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-424, + strand, RNAz p=0.908413

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               33-663, gnl|bosTau2|chr7 (11192513-11191891)
               

               
               33-663, gnl|Hg17|chr19 (11294387-11293759)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-663, gnl|bosTau2|chr7 (11192513-11191891)
               

               
               33-663, gnl|Hg17|chr19 (11294387-11293759)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	33-663, gnl\|bosTau2\|chr7 (11192513-11191891)
	33-663, gnl\|Hg17\|chr19 (11294387-11293759)