Ss1.1-rese08c_g17.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGGCCCCCGGGCGCGGCCCGCAGGGTGCCTGCCCACAAGTACGTGCTGGCCGTGGGGA GCTCTGTCTTCTATGCCATGTTTTACGGGGACCTGGCCGAAGTCAAGTCCGAGATCCACA TCCCTGACGTGGAGCCCGCGGCCTTTCTGATCCTGCTGAAGTACATGTACAGTGACGAGA TCGACCTGGAAGCCGACACGGTGCTGGCCACTCTCTACGCCGCCAAGAAGTACATTGTCC CCGCGCTAGCCAAGGCCTGTGTCAACTTTCTGGAGACGAGCCTGGAAGCCAAAAACGCCT GCGTCCTGCTGTCCCAGAGCCGGCTGTTCGAGGAGCCCGAGCTGACCCAGCGCTGCTGGG AGGTCATCGACGCGCAGGCCGAGATGGCGCTCAGGTCGGAGGGCTTCTGCGAAATCGACT GGCAGACGCTGGAGATCATCGTGATGCGGGAGGCGCTCAACGCCAAGGAGGCCGTGGTCT TCGAGGCGGTGCTGAGCTGGGCCGAGGCCGAGTGCAAGAGGCAGGGCCTGCCCGCCACCC CCCGCAACAAGAGGCACGTCCTGGGGCCGGCGCTGTACCTGGTGCGGATCCCGACCATGA CCCTGGAGGAGTTCGCCAACGGCGCCGCCCAGTCGGACATCCTGACGCTGGAGGAGACCC ACAACATCTTCCTGTGGTACACGGCGGCCAACAAGCCCCTCCTCGAGTTCCCCCTGACCA AGAGGAAAGGCCTGGCCCCCCAGAGGTGCCACCGCTTCCAGTCCTCCGCCTACCGCAGCA ACCAGTGGCGCTACCGGGGGCGCTGCGACAGCATCCAGTTTGCCGTGGACAGGAGGGTGT TCATCGCGGGGCTGGGCCTGTACGGCTCCAGCTCGGGGAAGGCCGAGTACAGCGTGAAGA TCGAGCTCAAGCGCCTGGGGGTGGTCCTGGCGCAGAACCTGACCAAGTTCGTCTCCGACG GCTCCAGCAGCACCTTCCCTGTCTGGTTCGAGCACCCCGTGCAGGTGGAGCAGGACACCT TCTACACGGCCAGCGCCGTCCTGGACGGCAGCGAGCTCAGCTACTTCGGGCAGGAGGGCA TGACGGAGGTGCAGTGCGGGAAGGTGGCCTTCCAGTTCCAGTGCTCCTCGGACAGCACCA ACGGCACGGGGGTGCAGGGCGGGCAGATCCCCGAGCTCATCTTCTACGCCTGAGGCGCCG CGCCGCTTGCGGCCGCCTCGCCGATGCCTGACGGCCCCGCGCCCGGGCCTCTCGGGAGCG GCTGTGGCCGAAGGCGTGACACAGACCCGCTCCTACACGGCCGGAGCCTGGGTCTCTGGA TTCTGGCCACTGGGCCCGCTGGCATCTCCTGTACGCTGGGGTGCACGTCTCAGGTGGAGG GCAGGTTTGGGGGGCACGAGGCAGGCCCAGTTCCCTCCCAGTGGCGCCTGTTTTGAGGGC TCTGCCACCCCTCCCAGCCTCTTGGATTCTCCTCTAGGTGGTTCTAGGCTTCTGATCCTC TCTTCAAATCCAAAATGGAAACATCACTTAAAGTACGTCAGCTATTTAAGTGGATTTTCA TAATAAAGTTTTAACAAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGGCCCCCGGGCGCGGCCCGCAGGGTGCCTGCCCACAAGTACGTGCTGGCCGTGGGGA GCTCTGTCTTCTATGCCATGTTTTACGGGGACCTGGCCGAAGTCAAGTCCGAGATCCACA TCCCTGACGTGGAGCCCGCGGCCTTTCTGATCCTGCTGAAGTACATGTACAGTGACGAGA TCGACCTGGAAGCCGACACGGTGCTGGCCACTCTCTACGCCGCCAAGAAGTACATTGTCC CCGCGCTAGCCAAGGCCTGTGTCAACTTTCTGGAGACGAGCCTGGAAGCCAAAAACGCCT GCGTCCTGCTGTCCCAGAGCCGGCTGTTCGAGGAGCCCGAGCTGACCCAGCGCTGCTGGG AGGTCATCGACGCGCAGGCCGAGATGGCGCTCAGGTCGGAGGGCTTCTGCGAAATCGACT GGCAGACGCTGGAGATCATCGTGATGCGGGAGGCGCTCAACGCCAAGGAGGCCGTGGTCT TCGAGGCGGTGCTGAGCTGGGCCGAGGCCGAGTGCAAGAGGCAGGGCCTGCCCGCCACCC CCCGCAACAAGAGGCACGTCCTGGGGCCGGCGCTGTACCTGGTGCGGATCCCGACCATGA CCCTGGAGGAGTTCGCCAACGGCGCCGCCCAGTCGGACATCCTGACGCTGGAGGAGACCC ACAACATCTTCCTGTGGTACACGGCGGCCAACAAGCCCCTCCTCGAGTTCCCCCTGACCA AGAGGAAAGGCCTGGCCCCCCAGAGGTGCCACCGCTTCCAGTCCTCCGCCTACCGCAGCA ACCAGTGGCGCTACCGGGGGCGCTGCGACAGCATCCAGTTTGCCGTGGACAGGAGGGTGT TCATCGCGGGGCTGGGCCTGTACGGCTCCAGCTCGGGGAAGGCCGAGTACAGCGTGAAGA TCGAGCTCAAGCGCCTGGGGGTGGTCCTGGCGCAGAACCTGACCAAGTTCGTCTCCGACG GCTCCAGCAGCACCTTCCCTGTCTGGTTCGAGCACCCCGTGCAGGTGGAGCAGGACACCT TCTACACGGCCAGCGCCGTCCTGGACGGCAGCGAGCTCAGCTACTTCGGGCAGGAGGGCA TGACGGAGGTGCAGTGCGGGAAGGTGGCCTTCCAGTTCCAGTGCTCCTCGGACAGCACCA ACGGCACGGGGGTGCAGGGCGGGCAGATCCCCGAGCTCATCTTCTACGCCTGAGGCGCCG CGCCGCTTGCGGCCGCCTCGCCGATGCCTGACGGCCCCGCGCCCGGGCCTCTCGGGAGCG GCTGTGGCCGAAGGCGTGACACAGACCCGCTCCTACACGGCCGGAGCCTGGGTCTCTGGA TTCTGGCCACTGGGCCCGCTGGCATCTCCTGTACGCTGGGGTGCACGTCTCAGGTGGAGG GCAGGTTTGGGGGGCACGAGGCAGGCCCAGTTCCCTCCCAGTGGCGCCTGTTTTGAGGGC TCTGCCACCCCTCCCAGCCTCTTGGATTCTCCTCTAGGTGGTTCTAGGCTTCTGATCCTC TCTTCAAATCCAAAATGGAAACATCACTTAAAGTACGTCAGCTATTTAAGTGGATTTTCA TAATAAAGTTTTAACAAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 281-400, + strand, RNAz p=0.520894 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 281-400, + strand, RNAz p=0.520894 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 162-1241, gnl|bosTau2|chr13 (897984-896900) | |
| 162-1241, gnl|canFam2|chr24 (13481740-13480691) | |
| 162-1241, gnl|danRer3|chr20 (7521172-7520102) | |
| 162-1241, gnl|dasNov1|scaffold_2737 (58848-59900) | |
| 162-1241, gnl|echTel1|scaffold_315796 (42203-41152) | |
| 162-1241, gnl|fr1|chrUn (15016673-15015613) | |
| 162-1241, gnl|galGal2|chr14 (19148307-19149371) | |
| 162-1241, gnl|hg17|chr20 (11851271-11852321) | |
| 162-1241, gnl|Hg17|chr20 (11851283-11852408) | |
| 162-1241, gnl|loxAfr1|scaffold_10389 (72136-71085) | |
| 162-1241, gnl|mm7|chr2 (138024299-138025350) | |
| 162-1241, gnl|Mm7|chr2 (138024312-138025430) | |
| 162-1241, gnl|monDom2|scaffold_1 (44813401-44814452) | |
| 162-1241, gnl|oryCun1|scaffold_177502 (9058-8002) | |
| 162-1241, gnl|panTro1|chr21 (11708913-11709963) | |
| 162-1241, gnl|rheMac2|chr10 (45220610-45221660) | |
| 162-1241, gnl|rn3|chr3 (126313473-126314524) | |
| 162-1241, gnl|tetNig1|chrUn_random (87782756-87781717) | |
| 162-1241, gnl|xenTro1|scaffold_258 (939068-938018) | |
| 1273-1585, gnl|bosTau2|chr21 (49112573-49112248) | |
| 1273-1585, gnl|canFam2|chr8 (75654457-75654776) | |
| 1273-1585, gnl|echTel1|scaffold_176101 (3146-2838) | |
| 1273-1585, gnl|hg17|chr14 (104788166-104788497) | |
| 1273-1585, gnl|Hg17|chr14 (104788186-104788476) | |
| 1273-1585, gnl|loxAfr1|scaffold_11461 (29838-30197) | |
| 1273-1585, gnl|mm7|chr12 (110503610-110503906) | |
| 1273-1585, gnl|Mm7|chr12 (110503597-110503885) | |
| 1273-1585, gnl|panTro1|chr15 (105465081-105465412) | |
| 1273-1585, gnl|rheMac2|chr7 (168602291-168602626) | |
| 1273-1585, gnl|rn3|chr6 (137992322-137992642) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-1241, gnl|bosTau2|chr13 (897984-896900) | |
| 162-1241, gnl|canFam2|chr24 (13481740-13480691) | |
| 162-1241, gnl|danRer3|chr20 (7521172-7520102) | |
| 162-1241, gnl|dasNov1|scaffold_2737 (58848-59900) | |
| 162-1241, gnl|echTel1|scaffold_315796 (42203-41152) | |
| 162-1241, gnl|fr1|chrUn (15016673-15015613) | |
| 162-1241, gnl|galGal2|chr14 (19148307-19149371) | |
| 162-1241, gnl|hg17|chr20 (11851271-11852321) | |
| 162-1241, gnl|Hg17|chr20 (11851283-11852408) | |
| 162-1241, gnl|loxAfr1|scaffold_10389 (72136-71085) | |
| 162-1241, gnl|mm7|chr2 (138024299-138025350) | |
| 162-1241, gnl|Mm7|chr2 (138024312-138025430) | |
| 162-1241, gnl|monDom2|scaffold_1 (44813401-44814452) | |
| 162-1241, gnl|oryCun1|scaffold_177502 (9058-8002) | |
| 162-1241, gnl|panTro1|chr21 (11708913-11709963) | |
| 162-1241, gnl|rheMac2|chr10 (45220610-45221660) | |
| 162-1241, gnl|rn3|chr3 (126313473-126314524) | |
| 162-1241, gnl|tetNig1|chrUn_random (87782756-87781717) | |
| 162-1241, gnl|xenTro1|scaffold_258 (939068-938018) | |
| 1273-1585, gnl|bosTau2|chr21 (49112573-49112248) | |
| 1273-1585, gnl|canFam2|chr8 (75654457-75654776) | |
| 1273-1585, gnl|echTel1|scaffold_176101 (3146-2838) | |
| 1273-1585, gnl|hg17|chr14 (104788166-104788497) | |
| 1273-1585, gnl|Hg17|chr14 (104788186-104788476) | |
| 1273-1585, gnl|loxAfr1|scaffold_11461 (29838-30197) | |
| 1273-1585, gnl|mm7|chr12 (110503610-110503906) | |
| 1273-1585, gnl|Mm7|chr12 (110503597-110503885) | |
| 1273-1585, gnl|panTro1|chr15 (105465081-105465412) | |
| 1273-1585, gnl|rheMac2|chr7 (168602291-168602626) | |
| 1273-1585, gnl|rn3|chr6 (137992322-137992642) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| ece (0.45861) | |
| col (0.390016) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| col (0.390016) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |