Non-Coding RNA Search

Ss1.1-rese08c_l22.5

Sequence:


               
               TGAAACTCATCCATCCCCCACTCTGCCTGGTGGCTCAGGGCCTGTTCTGAGAGAAAGCCC
CTCACACAGCCTGGGCTCTTGGCCAAGCAGCCTTGGACGATGAAGTCAGTGAGCGTGGGG
GTGAGGGTGAGCTCACTCAGGGCCCCCAGAGGAAGCCCTCCAGCCTCTGCCCTCCCCCCA
ACACAGGGTGGGAGCCCAGGCCTGTTCCTGGCAGCTGTGGCTGCAGCTGTGCTGCTGCTC
CCTCCAGGAATGTGTGACAGGCCCAAATGTTCCAGGAGATATCCCATGCGGGGACTTAGA
GTCGCTCATTTAGTTTCTGAGTTTTGCCTCAGACTACACGAAGTCCTCTTGAATAACCAC
TTGACCTGGTCCATGTGGGAGGGACCAACCCAGGGGCCATGCTGAGTATTCCTGAAACCC
TAGCATCTCCAAGGGGTAGGATAGCATGGTCAGCCTTTGAAACATGAGTCCCGAAGGGCC
CTGTTGCACTGTGAACAGTCTCATGCTGTGCCCTTCCTTTTACCCAGGGATACTGACTAA
GGCAACAATAAAATCTTTTTCTTTTGTGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAACTCATCCATCCCCCACTCTGCCTGGTGGCTCAGGGCCTGTTCTGAGAGAAAGCCC
CTCACACAGCCTGGGCTCTTGGCCAAGCAGCCTTGGACGATGAAGTCAGTGAGCGTGGGG
GTGAGGGTGAGCTCACTCAGGGCCCCCAGAGGAAGCCCTCCAGCCTCTGCCCTCCCCCCA
ACACAGGGTGGGAGCCCAGGCCTGTTCCTGGCAGCTGTGGCTGCAGCTGTGCTGCTGCTC
CCTCCAGGAATGTGTGACAGGCCCAAATGTTCCAGGAGATATCCCATGCGGGGACTTAGA
GTCGCTCATTTAGTTTCTGAGTTTTGCCTCAGACTACACGAAGTCCTCTTGAATAACCAC
TTGACCTGGTCCATGTGGGAGGGACCAACCCAGGGGCCATGCTGAGTATTCCTGAAACCC
TAGCATCTCCAAGGGGTAGGATAGCATGGTCAGCCTTTGAAACATGAGTCCCGAAGGGCC
CTGTTGCACTGTGAACAGTCTCATGCTGTGCCCTTCCTTTTACCCAGGGATACTGACTAA
GGCAACAATAAAATCTTTTTCTTTTGTGAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               6-106, - strand, RNAz p=0.759415
               

               
               40-272, - strand, RNAz p=0.973943
               

               
               146-289, - strand, RNAz p=0.939379

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-106, - strand, RNAz p=0.759415
               

               
               40-272, - strand, RNAz p=0.973943
               

               
               146-289, - strand, RNAz p=0.939379

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               116-180, - strand, RNAmicro p=0.953111

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               116-180, - strand, RNAmicro p=0.953111

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-530, gnl|bosTau2|chr8 (31846221-31845692)
               

               
               1-530, gnl|canFam2|chr11 (55662791-55663334)
               

               
               1-530, gnl|dasNov1|scaffold_849 (95067-95622)
               

               
               1-530, gnl|hg17|chr9 (36153185-36153726)
               

               
               1-530, gnl|Hg17|chr9 (36153294-36153875)
               

               
               1-530, gnl|loxAfr1|scaffold_3350 (111856-111293)
               

               
               1-530, gnl|mm7|chr4 (43992235-43992787)
               

               
               1-530, gnl|Mm7|chr4 (43992366-43992886)
               

               
               1-530, gnl|oryCun1|scaffold_208234 (27446-27969)
               

               
               1-530, gnl|panTro1|chr11_random (17679726-17680266)
               

               
               1-530, gnl|rheMac2|chr15 (41308978-41308439)
               

               
               1-530, gnl|rn3|chr5 (60440805-60441307)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-530, gnl|bosTau2|chr8 (31846221-31845692)
               

               
               1-530, gnl|canFam2|chr11 (55662791-55663334)
               

               
               1-530, gnl|dasNov1|scaffold_849 (95067-95622)
               

               
               1-530, gnl|hg17|chr9 (36153185-36153726)
               

               
               1-530, gnl|Hg17|chr9 (36153294-36153875)
               

               
               1-530, gnl|loxAfr1|scaffold_3350 (111856-111293)
               

               
               1-530, gnl|mm7|chr4 (43992235-43992787)
               

               
               1-530, gnl|Mm7|chr4 (43992366-43992886)
               

               
               1-530, gnl|oryCun1|scaffold_208234 (27446-27969)
               

               
               1-530, gnl|panTro1|chr11_random (17679726-17680266)
               

               
               1-530, gnl|rheMac2|chr15 (41308978-41308439)
               

               
               1-530, gnl|rn3|chr5 (60440805-60441307)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	6-106, - strand, RNAz p=0.759415
	40-272, - strand, RNAz p=0.973943
	146-289, - strand, RNAz p=0.939379

	1-530, gnl\|bosTau2\|chr8 (31846221-31845692)
	1-530, gnl\|canFam2\|chr11 (55662791-55663334)
	1-530, gnl\|dasNov1\|scaffold_849 (95067-95622)
	1-530, gnl\|hg17\|chr9 (36153185-36153726)
	1-530, gnl\|Hg17\|chr9 (36153294-36153875)
	1-530, gnl\|loxAfr1\|scaffold_3350 (111856-111293)
	1-530, gnl\|mm7\|chr4 (43992235-43992787)
	1-530, gnl\|Mm7\|chr4 (43992366-43992886)
	1-530, gnl\|oryCun1\|scaffold_208234 (27446-27969)
	1-530, gnl\|panTro1\|chr11_random (17679726-17680266)
	1-530, gnl\|rheMac2\|chr15 (41308978-41308439)
	1-530, gnl\|rn3\|chr5 (60440805-60441307)

	nlu (0.191681)
	nco (0.161734)
	pty (0.142714)
	lnt (0.142308)
	ese (0.126502)
	clu (0.119646)
	jca (0.11396)
	eje (0.0988338)