Non-Coding RNA Search

Ss1.1-rese09c_a10.5

Sequence:


               
               CAGCGCCCATGTAAGTACAGTCCGTACCGCGAAGGCGACGGAGGCCGCGGCGAGGGTCAG
AAGTCACCATGCTGAGGGCGGCGTGGAGGGCGCTGAGTTCGATTAGGACCCAGGCAGTGA
CCCAGGCCCCAGTCCTCGGGCTTCCGGGCGGAGGGTGCGCCAGGTTTCCCTCTGTCCAGC
GGGCCCTTCCCTCACGTCCTGCAGGTCTCATTCTCCGGGCCGCCCGTGGATATGCCGCCC
AAAAGCCAGTCCAGCCCAACCAAGATGACCCGCCTCCTTCCATGCTGCTCCTGGACTACC
AGAACGTGCCTGGAATTCATAAGGTTGATGATGTTGTGAAAAGACTCTTATCTTTGGAAA
TGGCCAACCAGAAGGAGAAGCTAAAAATCAAGAAGATGCAGTTGATGAACAAGGTCCTAG
AAAACCCTGAGGACACCAGCTCCCTGGAGGCTCGAATTGTTGCCTTGACTGTCAAGATCC
GCAATTATGAAGAACACATGCAGAAACATCGAAAGGACAAAGCCCACAAACGCTTTCTGC
TAATGAGCATTGACCAAAGGAAAAAGATGCTCAAAAACCTCCGCGAGACCAACTATGCCG
TCTTTGAGAAGATATGCAAGGAGCTAGGGATTGAGTACACCTTTCCCCCTCCGTACCACC
GAAAAGCCCACCGCCGCTGGGTGACCAAGAAGGCTCTGTGCACCCAGGTTTTCCGAGAGG
TTCAAAAGCTAAAGAAGCAAAAAAGAGCCTTAAGAGCTGCAGCTGTAGCAGCCCACAAAC
AAGGCTAGAAGAATCCAGAGAGCCCTTCCAAAGCTGGACCAGAGGCAATCAAAGGAAACC
AATAAATGTTGTTAAAGTTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCCCATGTAAGTACAGTCCGTACCGCGAAGGCGACGGAGGCCGCGGCGAGGGTCAG
AAGTCACCATGCTGAGGGCGGCGTGGAGGGCGCTGAGTTCGATTAGGACCCAGGCAGTGA
CCCAGGCCCCAGTCCTCGGGCTTCCGGGCGGAGGGTGCGCCAGGTTTCCCTCTGTCCAGC
GGGCCCTTCCCTCACGTCCTGCAGGTCTCATTCTCCGGGCCGCCCGTGGATATGCCGCCC
AAAAGCCAGTCCAGCCCAACCAAGATGACCCGCCTCCTTCCATGCTGCTCCTGGACTACC
AGAACGTGCCTGGAATTCATAAGGTTGATGATGTTGTGAAAAGACTCTTATCTTTGGAAA
TGGCCAACCAGAAGGAGAAGCTAAAAATCAAGAAGATGCAGTTGATGAACAAGGTCCTAG
AAAACCCTGAGGACACCAGCTCCCTGGAGGCTCGAATTGTTGCCTTGACTGTCAAGATCC
GCAATTATGAAGAACACATGCAGAAACATCGAAAGGACAAAGCCCACAAACGCTTTCTGC
TAATGAGCATTGACCAAAGGAAAAAGATGCTCAAAAACCTCCGCGAGACCAACTATGCCG
TCTTTGAGAAGATATGCAAGGAGCTAGGGATTGAGTACACCTTTCCCCCTCCGTACCACC
GAAAAGCCCACCGCCGCTGGGTGACCAAGAAGGCTCTGTGCACCCAGGTTTTCCGAGAGG
TTCAAAAGCTAAAGAAGCAAAAAAGAGCCTTAAGAGCTGCAGCTGTAGCAGCCCACAAAC
AAGGCTAGAAGAATCCAGAGAGCCCTTCCAAAGCTGGACCAGAGGCAATCAAAGGAAACC
AATAAATGTTGTTAAAGTTCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57096590|ref|XP_532559.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57096590|ref|XP_532559.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               52-876, gnl|bosTau2|chr16 (7721605-7720785)
               

               
               52-876, gnl|Hg17|chr15 (71563356-71562556)
               

               
               52-876, gnl|Mm7|chr4 (125491702-125500186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-876, gnl|bosTau2|chr16 (7721605-7720785)
               

               
               52-876, gnl|Hg17|chr15 (71563356-71562556)
               

               
               52-876, gnl|Mm7|chr4 (125491702-125500186)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               pro (1.02407)
               

               
               eje (0.593003)
               

               
               nca (0.547495)
               

               
               mas (0.42061)
               

               
               tes (0.415628)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               eje (0.593003)
               

               
               nca (0.547495)
               

               
               mas (0.42061)
               

               
               tes (0.415628)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               nms (0.213858)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	52-876, gnl\|bosTau2\|chr16 (7721605-7720785)
	52-876, gnl\|Hg17\|chr15 (71563356-71562556)
	52-876, gnl\|Mm7\|chr4 (125491702-125500186)

	pro (1.02407)
	eje (0.593003)
	nca (0.547495)
	mas (0.42061)
	tes (0.415628)
	hea (0.408998)
	elu (0.385356)
	cag (0.302389)
	cga (0.279096)
	ssp (0.271039)
	ste (0.270416)
	cly (0.241284)
	ebs (0.236602)
	nms (0.213858)
	nbm (0.198649)
	fcc (0.197785)
	col (0.195008)
	fhi (0.169578)
	nco (0.161734)
	fat (0.147427)
	hyp (0.142837)
	pty (0.142714)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	ecc (0.115035)
	jca (0.11396)