Non-Coding RNA Search

Ss1.1-rese09c_k16.5

Sequence:


               
               CCCTCTTCAAATGAGTTGATACATTATAGGCCAAGGACGTTCAACGTTGGCGACTTGGTC
TGGGGCCAAATCAACGGACTGACTTCCTGGCCTGGAAAATTAGTAAGAGAAGACGACGTT
CACAGTTCTTGTCAACAAAGCCCCGAGGAAGGGAAGGTGGAGCCGGAGAAGTTGAAGACA
CTAACAGAAGGTTTAGAAGCCTACAGCCGAGCCCGGAAAAGGAACAGAAAAAGTGGAAAG
CTAAATAACCATTTAGAAGCTGCTATTCATGAGGCCATGAGTGAACTGGACAAAATGTCT
GGGACTGTTCACCAAATCCCACAGGGAGACAGACAAATGAGACCCCCCAAACCCAAGAGG
AGGAAGATCTCCAGATAACAGGGACTACTCCACCCATGTGCAGTGTTTATTAAAGGAGTG
TGCACAGAGAGAACTGTCTATAAGTATTGATACAGCCTCTGTTATATCAATATTTATATG
ATGGCAGACAGTTACCACCACCACAGGGTGCTAAAAGAAACAGTGATACAGTATTTTTTT
GATCAGGAAGGATAAAGAATGCTTGAGAACCAATCAGGATCCCCTGAATGATGAAAGTGA
TAAATGGTCAAGAGATTACTGAGAAACTCTTTTTTTCTACAGTACTAAAATTGTGATTAT
AAGAAATAGTCCAAATGTTTCTGAAGAATTTTCAATGTTGTATATAGAAAATACAGAATT
TCATGGTGATATCAGAAATGTAAATATTGTACAATATTGTCATGTACAAGCGTACCTAAT
GCACACTTTATCTTTTATTGTACAAAGAAATAGTGTACAAAATTCTTTGGTTTCTATGGA
GTACACCTACCAGAGACTACAAGTGTAAAGTGATAAATAAAAATACAACCTAAATGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTCTTCAAATGAGTTGATACATTATAGGCCAAGGACGTTCAACGTTGGCGACTTGGTC
TGGGGCCAAATCAACGGACTGACTTCCTGGCCTGGAAAATTAGTAAGAGAAGACGACGTT
CACAGTTCTTGTCAACAAAGCCCCGAGGAAGGGAAGGTGGAGCCGGAGAAGTTGAAGACA
CTAACAGAAGGTTTAGAAGCCTACAGCCGAGCCCGGAAAAGGAACAGAAAAAGTGGAAAG
CTAAATAACCATTTAGAAGCTGCTATTCATGAGGCCATGAGTGAACTGGACAAAATGTCT
GGGACTGTTCACCAAATCCCACAGGGAGACAGACAAATGAGACCCCCCAAACCCAAGAGG
AGGAAGATCTCCAGATAACAGGGACTACTCCACCCATGTGCAGTGTTTATTAAAGGAGTG
TGCACAGAGAGAACTGTCTATAAGTATTGATACAGCCTCTGTTATATCAATATTTATATG
ATGGCAGACAGTTACCACCACCACAGGGTGCTAAAAGAAACAGTGATACAGTATTTTTTT
GATCAGGAAGGATAAAGAATGCTTGAGAACCAATCAGGATCCCCTGAATGATGAAAGTGA
TAAATGGTCAAGAGATTACTGAGAAACTCTTTTTTTCTACAGTACTAAAATTGTGATTAT
AAGAAATAGTCCAAATGTTTCTGAAGAATTTTCAATGTTGTATATAGAAAATACAGAATT
TCATGGTGATATCAGAAATGTAAATATTGTACAATATTGTCATGTACAAGCGTACCTAAT
GCACACTTTATCTTTTATTGTACAAAGAAATAGTGTACAAAATTCTTTGGTTTCTATGGA
GTACACCTACCAGAGACTACAAGTGTAAAGTGATAAATAAAAATACAACCTAAATGCTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               386-545, - strand, RNAz p=0.982939
               

               
               700-900, - strand, RNAz p=0.963069

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-545, - strand, RNAz p=0.982939
               

               
               700-900, - strand, RNAz p=0.963069

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               728-860, - strand, RNAmicro p=0.999547

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               728-860, - strand, RNAmicro p=0.999547

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-158, gnl|bosTau2|chr2 (31170705-31170548)
               

               
               1-158, gnl|canFam2|chr19 (53246971-53247094)
               

               
               1-158, gnl|danRer3|chrNA (98639118-98639004)
               

               
               1-158, gnl|echTel1|scaffold_286157 (34915-34792)
               

               
               1-158, gnl|fr1|chrUn (18096226-18096346)
               

               
               1-158, gnl|galGal2|chr7 (35349278-35349401)
               

               
               1-158, gnl|hg17|chr2 (149081741-149081864)
               

               
               1-158, gnl|Hg17|chr2 (149081740-149081897)
               

               
               1-158, gnl|loxAfr1|scaffold_5935 (55680-55803)
               

               
               1-158, gnl|mm7|chr2 (49286940-49287063)
               

               
               1-158, gnl|Mm7|chr2 (49286939-49287096)
               

               
               1-158, gnl|monDom2|scaffold_2 (38579897-38580020)
               

               
               1-158, gnl|panTro1|chr13_random (14506603-14506480)
               

               
               1-158, gnl|rheMac2|chr12 (12050149-12050272)
               

               
               1-158, gnl|rn3|chr3 (30146340-30146463)
               

               
               1-158, gnl|tetNig1|chrUn_random (155589134-155589252)
               

               
               1-158, gnl|xenTro1|scaffold_1993 (29605-29485)
               


               
               307-900, gnl|bosTau2|chr2 (31146440-31145851)
               

               
               307-900, gnl|Hg17|chr2 (149104171-149104761)
               

               
               307-900, gnl|Mm7|chr2 (49323699-49324292)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-158, gnl|bosTau2|chr2 (31170705-31170548)
               

               
               1-158, gnl|canFam2|chr19 (53246971-53247094)
               

               
               1-158, gnl|danRer3|chrNA (98639118-98639004)
               

               
               1-158, gnl|echTel1|scaffold_286157 (34915-34792)
               

               
               1-158, gnl|fr1|chrUn (18096226-18096346)
               

               
               1-158, gnl|galGal2|chr7 (35349278-35349401)
               

               
               1-158, gnl|hg17|chr2 (149081741-149081864)
               

               
               1-158, gnl|Hg17|chr2 (149081740-149081897)
               

               
               1-158, gnl|loxAfr1|scaffold_5935 (55680-55803)
               

               
               1-158, gnl|mm7|chr2 (49286940-49287063)
               

               
               1-158, gnl|Mm7|chr2 (49286939-49287096)
               

               
               1-158, gnl|monDom2|scaffold_2 (38579897-38580020)
               

               
               1-158, gnl|panTro1|chr13_random (14506603-14506480)
               

               
               1-158, gnl|rheMac2|chr12 (12050149-12050272)
               

               
               1-158, gnl|rn3|chr3 (30146340-30146463)
               

               
               1-158, gnl|tetNig1|chrUn_random (155589134-155589252)
               

               
               1-158, gnl|xenTro1|scaffold_1993 (29605-29485)
               


               
               307-900, gnl|bosTau2|chr2 (31146440-31145851)
               

               
               307-900, gnl|Hg17|chr2 (149104171-149104761)
               

               
               307-900, gnl|Mm7|chr2 (49323699-49324292)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	386-545, - strand, RNAz p=0.982939
	700-900, - strand, RNAz p=0.963069

	1-158, gnl\|bosTau2\|chr2 (31170705-31170548)
	1-158, gnl\|canFam2\|chr19 (53246971-53247094)
	1-158, gnl\|danRer3\|chrNA (98639118-98639004)
	1-158, gnl\|echTel1\|scaffold_286157 (34915-34792)
	1-158, gnl\|fr1\|chrUn (18096226-18096346)
	1-158, gnl\|galGal2\|chr7 (35349278-35349401)
	1-158, gnl\|hg17\|chr2 (149081741-149081864)
	1-158, gnl\|Hg17\|chr2 (149081740-149081897)
	1-158, gnl\|loxAfr1\|scaffold_5935 (55680-55803)
	1-158, gnl\|mm7\|chr2 (49286940-49287063)
	1-158, gnl\|Mm7\|chr2 (49286939-49287096)
	1-158, gnl\|monDom2\|scaffold_2 (38579897-38580020)
	1-158, gnl\|panTro1\|chr13_random (14506603-14506480)
	1-158, gnl\|rheMac2\|chr12 (12050149-12050272)
	1-158, gnl\|rn3\|chr3 (30146340-30146463)
	1-158, gnl\|tetNig1\|chrUn_random (155589134-155589252)
	1-158, gnl\|xenTro1\|scaffold_1993 (29605-29485)

	307-900, gnl\|bosTau2\|chr2 (31146440-31145851)
	307-900, gnl\|Hg17\|chr2 (149104171-149104761)
	307-900, gnl\|Mm7\|chr2 (49323699-49324292)

	fcc (0.197785)
	gul (0.177588)
	fco (0.157208)
	sug (0.127291)
	ese (0.126502)
	ldo (0.0970026)