Ss1.1-rese09c_m8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGCTGACTCTCTGCTCCTTTCCAGCCAGAGCCACTGCCTTGCCCCCAGGAGACTTAA GACATGGCACCCAAGAAGGCCAAGAGAAGGGCAGCGGCAGAAGGAAGCTCCAACGTCTTC TCCATGTTCGATCAGACTCAGATCCAGGAGTTCAAGGAGGCCTTCACAGTAATTGACCAG AACCGTGATGGCATTATTGACAAGGAAGACCTTCGGGACACCTTCGCAGCCATGGGGCGT CTAAATGTGAAGAATGAGGAGCTAGACGCCATGATGAAGGAAGCCAGCGGTCCCATCAAC TTCACTGTCTTCCTGACCATGTTTGGGGAGAAGCTCAAAGGTGCTGATCCTGAGGATGTG ATCACTGGAGCCTTCAAGGTTCTGGACCCAGAGGGGAAGGGTACCATCAAGAAGCACTTC CTGGAGGAGCTGCTTACCACGCAGTGTGACCGCTTCTCCCAGGAAGAGATCAAGAACATG TGGGCAGCCTTCCCCCCTGACGTGGGCGGCAACGTGGACTACAAGAACATCTGCTACGTC ATCACGCACGGCGACGCCAAGGACCAGGAGTAGGGGACCTCTTCGGTCTTTGATGGCCAA CACTTTCCTGCCAGTCCAACCCCCCTGGCTCGATTCCTAATAAATTGAATGGGTCTTGTT TCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGCTGACTCTCTGCTCCTTTCCAGCCAGAGCCACTGCCTTGCCCCCAGGAGACTTAA GACATGGCACCCAAGAAGGCCAAGAGAAGGGCAGCGGCAGAAGGAAGCTCCAACGTCTTC TCCATGTTCGATCAGACTCAGATCCAGGAGTTCAAGGAGGCCTTCACAGTAATTGACCAG AACCGTGATGGCATTATTGACAAGGAAGACCTTCGGGACACCTTCGCAGCCATGGGGCGT CTAAATGTGAAGAATGAGGAGCTAGACGCCATGATGAAGGAAGCCAGCGGTCCCATCAAC TTCACTGTCTTCCTGACCATGTTTGGGGAGAAGCTCAAAGGTGCTGATCCTGAGGATGTG ATCACTGGAGCCTTCAAGGTTCTGGACCCAGAGGGGAAGGGTACCATCAAGAAGCACTTC CTGGAGGAGCTGCTTACCACGCAGTGTGACCGCTTCTCCCAGGAAGAGATCAAGAACATG TGGGCAGCCTTCCCCCCTGACGTGGGCGGCAACGTGGACTACAAGAACATCTGCTACGTC ATCACGCACGGCGACGCCAAGGACCAGGAGTAGGGGACCTCTTCGGTCTTTGATGGCCAA CACTTTCCTGCCAGTCCAACCCCCCTGGCTCGATTCCTAATAAATTGAATGGGTCTTGTT TCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 88 entry(ies) | More info |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
| 91-236, gnl|bosTau2|chr13 (44684891-44685037) | |
| 91-236, gnl|canFam2|chr24 (28297362-28297596) | |
| 91-236, gnl|canFam2|chr3 (64644407-64644242) | |
| 91-236, gnl|canFam2|chrX (43963532-43963312) | |
| 91-236, gnl|danRer3|chr2 (22846396-22846238) | |
| 91-236, gnl|danRer3|chrNA (133814465-133814643) | |
| 91-236, gnl|danRer3|chrNA (133814641-133814432) | |
| 91-236, gnl|dasNov1|scaffold_3223 (94283-94464) | |
| 91-236, gnl|dasNov1|scaffold_3223 (94472-94313) | |
| 91-236, gnl|dasNov1|scaffold_3223 (94475-94280) | |
| 91-236, gnl|echTel1|scaffold_309793 (3742-3584) | |
| 91-236, gnl|echTel1|scaffold_309793 (3575-3734) | |
| 91-236, gnl|echTel1|scaffold_309793 (3565-3766) | |
| 91-236, gnl|fr1|chrUn (192013920-192014114) | |
| 91-236, gnl|fr1|chrUn (3094661-3094820) | |
| 91-236, gnl|fr1|chrUn (192014119-192013898) | |
| 91-236, gnl|galGal2|chr20 (378986-378806) | |
| 91-236, gnl|galGal2|chr20 (378975-378770) | |
| 91-236, gnl|hg17|chr12 (7914703-7914873) | |
| 91-236, gnl|hg17|chr20 (34606684-34606909) | |
| 91-236, gnl|Hg17|chr20 (34606740-34606886) | |
| 91-236, gnl|hg17|chr8 (42105760-42105966) | |
| 91-236, gnl|loxAfr1|scaffold_75495 (2435-2275) | |
| 91-236, gnl|loxAfr1|scaffold_75495 (2269-2426) | |
| 91-236, gnl|loxAfr1|scaffold_75495 (2269-2461) | |
| 91-236, gnl|mm7|chr2 (156519618-156519399) | |
| 91-236, gnl|mm7|chr2 (156519423-156519588) | |
| 91-236, gnl|mm7|chr2 (156519417-156519638) | |
| 91-236, gnl|Mm7|chr2 (156519473-156519619) | |
| 91-236, gnl|monDom2|scaffold_6 (88260612-88260823) | |
| 91-236, gnl|monDom2|scaffold_6 (88260807-88260642) | |
| 91-236, gnl|monDom2|scaffold_6 (10432571-10432352) | |
| 91-236, gnl|oryCun1|scaffold_203887 (130132-130360) | |
| 91-236, gnl|oryCun1|scaffold_215277 (49831-49666) | |
| 91-236, gnl|oryCun1|scaffold_215277 (49837-49614) | |
| 91-236, gnl|panTro1|chr10 (8455421-8455591) | |
| 91-236, gnl|panTro1|chr21 (36843497-36843722) | |
| 91-236, gnl|panTro1|chr7 (43524200-43524406) | |
| 91-236, gnl|rheMac2|chr10 (27951827-27951603) | |
| 91-236, gnl|rheMac2|chr11 (8180657-8180822) | |
| 91-236, gnl|rheMac2|chr8 (42705161-42705342) | |
| 91-236, gnl|rn3|chr3 (147096359-147096141) | |
| 91-236, gnl|rn3|chr3 (147096164-147096329) | |
| 91-236, gnl|rn3|chr3 (147096158-147096381) | |
| 91-236, gnl|tetNig1|chrUn_random (43292710-43292905) | |
| 91-236, gnl|tetNig1|chrUn_random (43292905-43292740) | |
| 91-236, gnl|tetNig1|chrUn_random (43292905-43292707) | |
| 91-236, gnl|xenTro1|scaffold_345 (1221996-1222190) | |
| 91-236, gnl|xenTro1|scaffold_345 (1222170-1222005) | |
| 91-236, gnl|xenTro1|scaffold_345 (1222170-1221972) | |
| 256-375, gnl|bosTau2|chr13 (44687903-44688022) | |
| 256-375, gnl|canFam2|chr24 (28299276-28299458) | |
| 256-375, gnl|canFam2|chr3 (64644210-64644047) | |
| 256-375, gnl|danRer3|chr2 (22845001-22844847) | |
| 256-375, gnl|danRer3|chrNA (133812959-133812790) | |
| 256-375, gnl|dasNov1|scaffold_3223 (94281-94118) | |
| 256-375, gnl|dasNov1|scaffold_3223 (94279-94123) | |
| 256-375, gnl|echTel1|scaffold_309793 (3765-3928) | |
| 256-375, gnl|echTel1|scaffold_55088 (864-685) | |
| 256-375, gnl|fr1|chrUn (3095577-3095728) | |
| 256-375, gnl|fr1|chrUn (192013808-192013639) | |
| 256-375, gnl|galGal2|chr20 (377416-377253) | |
| 256-375, gnl|galGal2|chr20 (377434-377251) | |
| 256-375, gnl|hg17|chr12 (7914904-7915067) | |
| 256-375, gnl|hg17|chr20 (34609836-34610018) | |
| 256-375, gnl|Hg17|chr20 (34609866-34609985) | |
| 256-375, gnl|loxAfr1|scaffold_36933 (14482-14324) | |
| 256-375, gnl|loxAfr1|scaffold_36933 (14495-14314) | |
| 256-375, gnl|mm7|chr2 (156521373-156521536) | |
| 256-375, gnl|mm7|chr2 (156521360-156521541) | |
| 256-375, gnl|Mm7|chr2 (156521389-156521508) | |
| 256-375, gnl|monDom2|scaffold_6 (88260610-88260447) | |
| 256-375, gnl|monDom2|scaffold_6 (10429982-10429800) | |
| 256-375, gnl|oryCun1|scaffold_215277 (48205-48042) | |
| 256-375, gnl|oryCun1|scaffold_215277 (48219-48037) | |
| 256-375, gnl|panTro1|chr10 (8455622-8455785) | |
| 256-375, gnl|panTro1|chr21 (36846651-36846833) | |
| 256-375, gnl|rheMac2|chr10 (27948949-27948767) | |
| 256-375, gnl|rheMac2|chr11 (8180853-8181017) | |
| 256-375, gnl|rn3|chr3 (147098547-147098710) | |
| 256-375, gnl|rn3|chr3 (147098534-147098715) | |
| 256-375, gnl|tetNig1|chrUn_random (43292534-43292383) | |
| 256-375, gnl|tetNig1|chrUn_random (43292539-43292373) | |
| 256-375, gnl|xenTro1|scaffold_345 (1219507-1219354) | |
| 256-375, gnl|xenTro1|scaffold_637 (114345-114171) | |
| 467-665, gnl|bosTau2|chr25 (24414841-24414640) | |
| 467-665, gnl|Hg17|chr16 (30296616-30296813) | |
| 467-665, gnl|Mm7|chr7 (123310647-123310846) |
| Aligned organism(s): 88 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-236, gnl|bosTau2|chr13 (44684891-44685037) | |
| 91-236, gnl|canFam2|chr24 (28297362-28297596) | |
| 91-236, gnl|canFam2|chr3 (64644407-64644242) | |
| 91-236, gnl|canFam2|chrX (43963532-43963312) | |
| 91-236, gnl|danRer3|chr2 (22846396-22846238) | |
| 91-236, gnl|danRer3|chrNA (133814465-133814643) | |
| 91-236, gnl|danRer3|chrNA (133814641-133814432) | |
| 91-236, gnl|dasNov1|scaffold_3223 (94283-94464) | |
| 91-236, gnl|dasNov1|scaffold_3223 (94472-94313) | |
| 91-236, gnl|dasNov1|scaffold_3223 (94475-94280) | |
| 91-236, gnl|echTel1|scaffold_309793 (3742-3584) | |
| 91-236, gnl|echTel1|scaffold_309793 (3575-3734) | |
| 91-236, gnl|echTel1|scaffold_309793 (3565-3766) | |
| 91-236, gnl|fr1|chrUn (192013920-192014114) | |
| 91-236, gnl|fr1|chrUn (3094661-3094820) | |
| 91-236, gnl|fr1|chrUn (192014119-192013898) | |
| 91-236, gnl|galGal2|chr20 (378986-378806) | |
| 91-236, gnl|galGal2|chr20 (378975-378770) | |
| 91-236, gnl|hg17|chr12 (7914703-7914873) | |
| 91-236, gnl|hg17|chr20 (34606684-34606909) | |
| 91-236, gnl|Hg17|chr20 (34606740-34606886) | |
| 91-236, gnl|hg17|chr8 (42105760-42105966) | |
| 91-236, gnl|loxAfr1|scaffold_75495 (2435-2275) | |
| 91-236, gnl|loxAfr1|scaffold_75495 (2269-2426) | |
| 91-236, gnl|loxAfr1|scaffold_75495 (2269-2461) | |
| 91-236, gnl|mm7|chr2 (156519618-156519399) | |
| 91-236, gnl|mm7|chr2 (156519423-156519588) | |
| 91-236, gnl|mm7|chr2 (156519417-156519638) | |
| 91-236, gnl|Mm7|chr2 (156519473-156519619) | |
| 91-236, gnl|monDom2|scaffold_6 (88260612-88260823) | |
| 91-236, gnl|monDom2|scaffold_6 (88260807-88260642) | |
| 91-236, gnl|monDom2|scaffold_6 (10432571-10432352) | |
| 91-236, gnl|oryCun1|scaffold_203887 (130132-130360) | |
| 91-236, gnl|oryCun1|scaffold_215277 (49831-49666) | |
| 91-236, gnl|oryCun1|scaffold_215277 (49837-49614) | |
| 91-236, gnl|panTro1|chr10 (8455421-8455591) | |
| 91-236, gnl|panTro1|chr21 (36843497-36843722) | |
| 91-236, gnl|panTro1|chr7 (43524200-43524406) | |
| 91-236, gnl|rheMac2|chr10 (27951827-27951603) | |
| 91-236, gnl|rheMac2|chr11 (8180657-8180822) | |
| 91-236, gnl|rheMac2|chr8 (42705161-42705342) | |
| 91-236, gnl|rn3|chr3 (147096359-147096141) | |
| 91-236, gnl|rn3|chr3 (147096164-147096329) | |
| 91-236, gnl|rn3|chr3 (147096158-147096381) | |
| 91-236, gnl|tetNig1|chrUn_random (43292710-43292905) | |
| 91-236, gnl|tetNig1|chrUn_random (43292905-43292740) | |
| 91-236, gnl|tetNig1|chrUn_random (43292905-43292707) | |
| 91-236, gnl|xenTro1|scaffold_345 (1221996-1222190) | |
| 91-236, gnl|xenTro1|scaffold_345 (1222170-1222005) | |
| 91-236, gnl|xenTro1|scaffold_345 (1222170-1221972) | |
| 256-375, gnl|bosTau2|chr13 (44687903-44688022) | |
| 256-375, gnl|canFam2|chr24 (28299276-28299458) | |
| 256-375, gnl|canFam2|chr3 (64644210-64644047) | |
| 256-375, gnl|danRer3|chr2 (22845001-22844847) | |
| 256-375, gnl|danRer3|chrNA (133812959-133812790) | |
| 256-375, gnl|dasNov1|scaffold_3223 (94281-94118) | |
| 256-375, gnl|dasNov1|scaffold_3223 (94279-94123) | |
| 256-375, gnl|echTel1|scaffold_309793 (3765-3928) | |
| 256-375, gnl|echTel1|scaffold_55088 (864-685) | |
| 256-375, gnl|fr1|chrUn (3095577-3095728) | |
| 256-375, gnl|fr1|chrUn (192013808-192013639) | |
| 256-375, gnl|galGal2|chr20 (377416-377253) | |
| 256-375, gnl|galGal2|chr20 (377434-377251) | |
| 256-375, gnl|hg17|chr12 (7914904-7915067) | |
| 256-375, gnl|hg17|chr20 (34609836-34610018) | |
| 256-375, gnl|Hg17|chr20 (34609866-34609985) | |
| 256-375, gnl|loxAfr1|scaffold_36933 (14482-14324) | |
| 256-375, gnl|loxAfr1|scaffold_36933 (14495-14314) | |
| 256-375, gnl|mm7|chr2 (156521373-156521536) | |
| 256-375, gnl|mm7|chr2 (156521360-156521541) | |
| 256-375, gnl|Mm7|chr2 (156521389-156521508) | |
| 256-375, gnl|monDom2|scaffold_6 (88260610-88260447) | |
| 256-375, gnl|monDom2|scaffold_6 (10429982-10429800) | |
| 256-375, gnl|oryCun1|scaffold_215277 (48205-48042) | |
| 256-375, gnl|oryCun1|scaffold_215277 (48219-48037) | |
| 256-375, gnl|panTro1|chr10 (8455622-8455785) | |
| 256-375, gnl|panTro1|chr21 (36846651-36846833) | |
| 256-375, gnl|rheMac2|chr10 (27948949-27948767) | |
| 256-375, gnl|rheMac2|chr11 (8180853-8181017) | |
| 256-375, gnl|rn3|chr3 (147098547-147098710) | |
| 256-375, gnl|rn3|chr3 (147098534-147098715) | |
| 256-375, gnl|tetNig1|chrUn_random (43292534-43292383) | |
| 256-375, gnl|tetNig1|chrUn_random (43292539-43292373) | |
| 256-375, gnl|xenTro1|scaffold_345 (1219507-1219354) | |
| 256-375, gnl|xenTro1|scaffold_637 (114345-114171) | |
| 467-665, gnl|bosTau2|chr25 (24414841-24414640) | |
| 467-665, gnl|Hg17|chr16 (30296616-30296813) | |
| 467-665, gnl|Mm7|chr7 (123310647-123310846) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| nms (38.7083) | |
| mas (29.4427) | |
| ldo (19.1095) | |
| ste (15.2785) | |
| sme (11.6066) | |
| ssp (10.7061) | |
| ese (8.60215) | |
| ton (8.59951) | |
| nep (6.6213) | |
| eru (4.44178) | |
| bfe (2.24786) | |
| col (1.56006) | |
| eye (1.53453) | |
| vin (1.33023) | |
| tbr (1.07925) | |
| nca (0.958117) | |
| ctl (0.918414) | |
| jca (0.569801) | |
| lin (0.436808) | |
| pty (0.428143) | |
| isp (0.300752) | |
| fli (0.202881) | |
| cki (0.165235) | |
| lyg (0.133103) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (38.7083) | |
| mas (29.4427) | |
| ldo (19.1095) | |
| ste (15.2785) | |
| sme (11.6066) | |
| ssp (10.7061) | |
| ese (8.60215) | |
| ton (8.59951) | |
| nep (6.6213) | |
| eru (4.44178) | |
| bfe (2.24786) | |
| col (1.56006) | |
| eye (1.53453) | |
| vin (1.33023) | |
| tbr (1.07925) | |
| nca (0.958117) | |
| ctl (0.918414) | |
| jca (0.569801) | |
| lin (0.436808) | |
| pty (0.428143) | |
| isp (0.300752) | |
| fli (0.202881) | |
| cki (0.165235) | |
| lyg (0.133103) |