Ss1.1-rese11c_f5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCAAAATTAGATAAATTGTTGATTATTATTCAGAATGAAGACATTGCAGGTTTCATTC ACAAGGTACCTGGCTTGGTGACTTTAAAGAAGCTCCCTTGTGTTAGTTTTGCTGGTGTTG ATAGTCTGGATGATGTTAAAAATCATACTTACAATGAATTATTTGTATCTGGAGGTTGTA TCGTTTCTGATGAATCCATTCTAAACCCAGAAGTAATCACAATTGAGAACCTTAAAAATT TTTTGACATTCCTTGAAGAACTTAGTACTCCAGAAGGAAAATGGCAATGGAAAGTCCACT GTAAATTTCAGAAAAAACTAAAGGAACTGGGCAGATTGAATGCTAAAGCACTAAGTCTTT TGACGCTTCTGAATGTCTATCAGAAGAAACATCTCGTTGAAATCTTGTCATACCACAACT GTGATTCACAAACTCGGAATGCTCCAGAATTGGATTGCCTCATTAGACTTCAGGCTCAGA ACATACAGCAACGACACATAGTCTTTTTAACAGAAAAGAGTATCAAGATGCTTTCCAGTT ATACCGATAATGGAATAGTAGTTGCAACTGTTGAAGACTTTATGCAAAACTTTAAAAATC TTGTGGGCTATCACAATTCAATCACAGAAGAAAACCTTCCATTGCTTGGTGCTAATGAGA ATCTTGAGTCACAGTCAGATGCTGTTTTGACATTAACCCCTTTGGAGCTGGGAGTTGGGA TTTCCCAACATTAAACGTGAACACATTTCGCAGAAGCTTTTAGCATCGGATTATCTGGAC ATTCACACCTAGTGTGAGTGTTGTGACTAAGTGAACTTGTGGCAGAAGACCAAGCTTTAA GGGATTGTGGACTTGCAGATCCTGACGCATTATATTGTGTGAGTAGTGTATAATTTTAAA ACATAAACAAATTGTGTATTTCAATAGAGGAGGACTTTTTGTTTTTTAAATGTAGCTCTT TTAGAAAACGATGAAAAGGATGAAGAGGATATGTCTCTGGATTCAGGGGATGAAATCTCA CAAATTGAAGTATGCAGCAATTTTCATTCAGAAATATTGGCGCAAGAGACCAAAGGATCA AGTGGAACAGATCAAAAAAAGAATATTCAAATTGAGTTGCAATCGTCTCTTGACTTGCAA AAATGTTTATTAGAAGATAAGACTTATCAAATTGATTCGGAAGAGAGAGCTTCTATTGAT ACAGTATGCTCTGAAGGAGAGAACAGCAATTCAGCTGAGCAAGATTCGTATAGCAACTTT CAGGTTTATCACAGTCAATTAAATATGTCCCATCAGTTTAGTCATTTTAATGTTCTCACT CATCAGACATTTTTGGGGACACCATATGCCCTTTTATCAAATCAGTCTCAAGAAAGTGAA AATTACTTTTTAAATGCTTATACTCAAAGCTTGGATAGAGATAAACCTCCATCTCCATTA AGCTGGTGGAAAAGTGATTCTTCCAGGCCGTTTTCAAAAGAGAAATAATTACAGTAACTT TAAAAAAAAAAAAAATAGGTTGTTATGGACTTTTTCTGTTTCTTAAAACTGAATTAACAA TTTATATTTCATTCTCTTAACGAGGTTTCTTTTCCTTTCTCAAATTTTTTCCCCTTTTAT TTAAATCATGATGGCCTGTAACAGTTGAAGCATCTGAAAATTAAAATAAATATATATATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCAAAATTAGATAAATTGTTGATTATTATTCAGAATGAAGACATTGCAGGTTTCATTC ACAAGGTACCTGGCTTGGTGACTTTAAAGAAGCTCCCTTGTGTTAGTTTTGCTGGTGTTG ATAGTCTGGATGATGTTAAAAATCATACTTACAATGAATTATTTGTATCTGGAGGTTGTA TCGTTTCTGATGAATCCATTCTAAACCCAGAAGTAATCACAATTGAGAACCTTAAAAATT TTTTGACATTCCTTGAAGAACTTAGTACTCCAGAAGGAAAATGGCAATGGAAAGTCCACT GTAAATTTCAGAAAAAACTAAAGGAACTGGGCAGATTGAATGCTAAAGCACTAAGTCTTT TGACGCTTCTGAATGTCTATCAGAAGAAACATCTCGTTGAAATCTTGTCATACCACAACT GTGATTCACAAACTCGGAATGCTCCAGAATTGGATTGCCTCATTAGACTTCAGGCTCAGA ACATACAGCAACGACACATAGTCTTTTTAACAGAAAAGAGTATCAAGATGCTTTCCAGTT ATACCGATAATGGAATAGTAGTTGCAACTGTTGAAGACTTTATGCAAAACTTTAAAAATC TTGTGGGCTATCACAATTCAATCACAGAAGAAAACCTTCCATTGCTTGGTGCTAATGAGA ATCTTGAGTCACAGTCAGATGCTGTTTTGACATTAACCCCTTTGGAGCTGGGAGTTGGGA TTTCCCAACATTAAACGTGAACACATTTCGCAGAAGCTTTTAGCATCGGATTATCTGGAC ATTCACACCTAGTGTGAGTGTTGTGACTAAGTGAACTTGTGGCAGAAGACCAAGCTTTAA GGGATTGTGGACTTGCAGATCCTGACGCATTATATTGTGTGAGTAGTGTATAATTTTAAA ACATAAACAAATTGTGTATTTCAATAGAGGAGGACTTTTTGTTTTTTAAATGTAGCTCTT TTAGAAAACGATGAAAAGGATGAAGAGGATATGTCTCTGGATTCAGGGGATGAAATCTCA CAAATTGAAGTATGCAGCAATTTTCATTCAGAAATATTGGCGCAAGAGACCAAAGGATCA AGTGGAACAGATCAAAAAAAGAATATTCAAATTGAGTTGCAATCGTCTCTTGACTTGCAA AAATGTTTATTAGAAGATAAGACTTATCAAATTGATTCGGAAGAGAGAGCTTCTATTGAT ACAGTATGCTCTGAAGGAGAGAACAGCAATTCAGCTGAGCAAGATTCGTATAGCAACTTT CAGGTTTATCACAGTCAATTAAATATGTCCCATCAGTTTAGTCATTTTAATGTTCTCACT CATCAGACATTTTTGGGGACACCATATGCCCTTTTATCAAATCAGTCTCAAGAAAGTGAA AATTACTTTTTAAATGCTTATACTCAAAGCTTGGATAGAGATAAACCTCCATCTCCATTA AGCTGGTGGAAAAGTGATTCTTCCAGGCCGTTTTCAAAAGAGAAATAATTACAGTAACTT TAAAAAAAAAAAAAATAGGTTGTTATGGACTTTTTCTGTTTCTTAAAACTGAATTAACAA TTTATATTTCATTCTCTTAACGAGGTTTCTTTTCCTTTCTCAAATTTTTTCCCCTTTTAT TTAAATCATGATGGCCTGTAACAGTTGAAGCATCTGAAAATTAAAATAAATATATATATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 332-450, - strand, RNAz p=0.967244 | |
| 716-835, - strand, RNAz p=0.671472 | |
| 1315-1434, - strand, RNAz p=0.631904 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 332-450, - strand, RNAz p=0.967244 | |
| 716-835, - strand, RNAz p=0.671472 | |
| 1315-1434, - strand, RNAz p=0.631904 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 64-225, gnl|bosTau2|chr22 (32594185-32594024) | |
| 64-225, gnl|Hg17|chr3 (56636811-56636650) | |
| 64-225, gnl|Mm7|chr14 (24909303-24909464) | |
| 332-513, gnl|bosTau2|chr22 (32592273-32592092) | |
| 332-513, gnl|canFam2|chr20 (36708618-36708404) | |
| 332-513, gnl|danRer3|chr22 (49053822-49053639) | |
| 332-513, gnl|dasNov1|scaffold_17377 (11006-11220) | |
| 332-513, gnl|echTel1|scaffold_308743 (61332-61118) | |
| 332-513, gnl|fr1|chrUn (176318801-176318618) | |
| 332-513, gnl|galGal2|chr12 (8458319-8458536) | |
| 332-513, gnl|hg17|chr3 (56633894-56634108) | |
| 332-513, gnl|Hg17|chr3 (56634077-56633896) | |
| 332-513, gnl|loxAfr1|scaffold_546 (14925-15139) | |
| 332-513, gnl|mm7|chr14 (24912578-24912363) | |
| 332-513, gnl|Mm7|chr14 (24912393-24912574) | |
| 332-513, gnl|monDom2|scaffold_76 (850323-850109) | |
| 332-513, gnl|oryCun1|scaffold_210866 (4091-4305) | |
| 332-513, gnl|panTro1|chr2 (58293008-58293222) | |
| 332-513, gnl|rheMac2|chr2 (79745436-79745222) | |
| 332-513, gnl|tetNig1|chr9 (6052089-6051906) | |
| 332-513, gnl|xenTro1|scaffold_585 (279257-279059) | |
| 677-1680, gnl|bosTau2|chr22 (32591226-32590238) | |
| 677-1680, gnl|Hg17|chr3 (56632913-56631936) | |
| 677-1680, gnl|Mm7|chr14 (24913407-24914336) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 64-225, gnl|bosTau2|chr22 (32594185-32594024) | |
| 64-225, gnl|Hg17|chr3 (56636811-56636650) | |
| 64-225, gnl|Mm7|chr14 (24909303-24909464) | |
| 332-513, gnl|bosTau2|chr22 (32592273-32592092) | |
| 332-513, gnl|canFam2|chr20 (36708618-36708404) | |
| 332-513, gnl|danRer3|chr22 (49053822-49053639) | |
| 332-513, gnl|dasNov1|scaffold_17377 (11006-11220) | |
| 332-513, gnl|echTel1|scaffold_308743 (61332-61118) | |
| 332-513, gnl|fr1|chrUn (176318801-176318618) | |
| 332-513, gnl|galGal2|chr12 (8458319-8458536) | |
| 332-513, gnl|hg17|chr3 (56633894-56634108) | |
| 332-513, gnl|Hg17|chr3 (56634077-56633896) | |
| 332-513, gnl|loxAfr1|scaffold_546 (14925-15139) | |
| 332-513, gnl|mm7|chr14 (24912578-24912363) | |
| 332-513, gnl|Mm7|chr14 (24912393-24912574) | |
| 332-513, gnl|monDom2|scaffold_76 (850323-850109) | |
| 332-513, gnl|oryCun1|scaffold_210866 (4091-4305) | |
| 332-513, gnl|panTro1|chr2 (58293008-58293222) | |
| 332-513, gnl|rheMac2|chr2 (79745436-79745222) | |
| 332-513, gnl|tetNig1|chr9 (6052089-6051906) | |
| 332-513, gnl|xenTro1|scaffold_585 (279257-279059) | |
| 677-1680, gnl|bosTau2|chr22 (32591226-32590238) | |
| 677-1680, gnl|Hg17|chr3 (56632913-56631936) | |
| 677-1680, gnl|Mm7|chr14 (24913407-24914336) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| clu (0.717875) | |
| liv (0.585137) | |
| amn (0.417711) | |
| cty (0.41632) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| sag (0.182715) | |
| gul (0.177588) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| liv (0.585137) | |
| amn (0.417711) | |
| cty (0.41632) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| thg (0.253582) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| sag (0.182715) | |
| gul (0.177588) | |
| lun (0.150489) | |
| fat (0.147427) | |
| spl (0.143184) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) |