Ss1.1-rese11c_h1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCATCAGTCCAGGCCCTGCCCTACGGTCTCATCCCGTTCCGTTTCACCCCTCTCGCC CCTCAGCTCTATCCTCCAGGCCCGTCCCCTGAACTCTGCCCTCGGATGTTCCACCGCCCA GAGCTTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGGTTCGGGGGCTCCTG GGCGGGGGTCCCGGGGCGCCCCTGCTCCCTCGGGACCTGTTGTCCCGGTCCTCGTCTTTC CCCCGGATCTAGTATTCAGGGCGGACCAGCGGAGCGGCCCCCGGCAGTTGCTGACCCTCT ATAACCCCACGGGAGCAGTGCTTCGCTTCCGAGTTCTGTGCACAGCACCTGCCAAATACA CAGTGTTTGACGCGGAAGGATATGTGAAGCCTCAATCCTGCATTGACATTGTGATTCGCC ACGTGGCCCCCAATCCCAGCCACTATGACGTCCAGGACCGCTTCCGCATTGAGCTGTCTG AGGAAGGAACAGAGGGCCGAGTGGTGGGGCGCAAGGACATCACCTCAGTTCTGAGGGCCC CAACGTACCCCCCTGAGCTTCAGGGACAGCCTGACCCAACGCCCCACCCAGGGCCCCCTT CCTGGACCGCTCCACCCTCGGCCCAACACTTCCCAGAGAACCCCCACCCGCAACTGGCCA CCAGCTCCTTCCTCCTCTTCTTGCTGATGGGCATCGTCTCGGTGGCCTTCCTGCTGCTCC CGCTCCAGGATGAACTTGGCAGCCAGCTGCCCCCAATCTTGCACGTCTCCCTGGGACAGA AGTTGGTGGCAGCCTACGTCTTGGGCCTCCTGACCATGGTGTTCCTCCGGATCTGAGCTC CCTGCTCCACCTCCACCACCCCCCTCCCCGGGCAGGGACGTGGACGTGGACATGAGACAG CCACTGTGATGCTCATAACCCTGCCGCCACGCCTGCTTCCTTCTTCCTCCCTCCTGCCCA TCCCCCCACCCCTACACAGACAAAACCCAGGGATTTGTATTCATTTCCAAGTTGAATAAA ATAAATTTGTAAAGTTGAGCTAAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCATCAGTCCAGGCCCTGCCCTACGGTCTCATCCCGTTCCGTTTCACCCCTCTCGCC CCTCAGCTCTATCCTCCAGGCCCGTCCCCTGAACTCTGCCCTCGGATGTTCCACCGCCCA GAGCTTGCATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGGTTCGGGGGCTCCTG GGCGGGGGTCCCGGGGCGCCCCTGCTCCCTCGGGACCTGTTGTCCCGGTCCTCGTCTTTC CCCCGGATCTAGTATTCAGGGCGGACCAGCGGAGCGGCCCCCGGCAGTTGCTGACCCTCT ATAACCCCACGGGAGCAGTGCTTCGCTTCCGAGTTCTGTGCACAGCACCTGCCAAATACA CAGTGTTTGACGCGGAAGGATATGTGAAGCCTCAATCCTGCATTGACATTGTGATTCGCC ACGTGGCCCCCAATCCCAGCCACTATGACGTCCAGGACCGCTTCCGCATTGAGCTGTCTG AGGAAGGAACAGAGGGCCGAGTGGTGGGGCGCAAGGACATCACCTCAGTTCTGAGGGCCC CAACGTACCCCCCTGAGCTTCAGGGACAGCCTGACCCAACGCCCCACCCAGGGCCCCCTT CCTGGACCGCTCCACCCTCGGCCCAACACTTCCCAGAGAACCCCCACCCGCAACTGGCCA CCAGCTCCTTCCTCCTCTTCTTGCTGATGGGCATCGTCTCGGTGGCCTTCCTGCTGCTCC CGCTCCAGGATGAACTTGGCAGCCAGCTGCCCCCAATCTTGCACGTCTCCCTGGGACAGA AGTTGGTGGCAGCCTACGTCTTGGGCCTCCTGACCATGGTGTTCCTCCGGATCTGAGCTC CCTGCTCCACCTCCACCACCCCCCTCCCCGGGCAGGGACGTGGACGTGGACATGAGACAG CCACTGTGATGCTCATAACCCTGCCGCCACGCCTGCTTCCTTCTTCCTCCCTCCTGCCCA TCCCCCCACCCCTACACAGACAAAACCCAGGGATTTGTATTCATTTCCAAGTTGAATAAA ATAAATTTGTAAAGTTGAGCTAAGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-153, - strand, RNAz p=0.727251 | |
| 640-758, - strand, RNAz p=0.990712 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-153, - strand, RNAz p=0.727251 | |
| 640-758, - strand, RNAz p=0.990712 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-333, gnl|bosTau2|chr25 (32361715-32361383) | |
| 1-333, gnl|Hg17|chr7 (99854943-99855270) | |
| 1-333, gnl|Mm7|chr5 (136518605-136518273) | |
| 407-639, gnl|bosTau2|chr25 (32360865-32360633) | |
| 407-639, gnl|Hg17|chr7 (99855748-99855980) | |
| 407-639, gnl|Mm7|chr5 (136517828-136517596) | |
| 640-805, gnl|bosTau2|chr25 (32359920-32359755) | |
| 640-805, gnl|canFam2|chr6 (12086724-12086592) | |
| 640-805, gnl|canFam2|chr6 (12086756-12086594) | |
| 640-805, gnl|echTel1|scaffold_324334 (6460-6604) | |
| 640-805, gnl|echTel1|scaffold_324334 (6440-6602) | |
| 640-805, gnl|hg17|chr12 (90434239-90434369) | |
| 640-805, gnl|hg17|chr7 (99857143-99857305) | |
| 640-805, gnl|Hg17|chr7 (99857141-99857306) | |
| 640-805, gnl|mm7|chr10 (96750941-96750843) | |
| 640-805, gnl|mm7|chr5 (136515583-136515421) | |
| 640-805, gnl|Mm7|chr5 (136515583-136515418) | |
| 640-805, gnl|monDom2|scaffold_66 (2467919-2468046) | |
| 640-805, gnl|oryCun1|scaffold_196605 (26865-26703) | |
| 640-805, gnl|oryCun1|scaffold_55924 (1207-1332) | |
| 640-805, gnl|panTro1|chr10 (92604940-92605070) | |
| 640-805, gnl|panTro1|chr6 (101631965-101632127) | |
| 640-805, gnl|rheMac2|chr11 (92730688-92730818) | |
| 640-805, gnl|rheMac2|chr3 (47797889-47798051) | |
| 640-805, gnl|rn3|chr12 (19653172-19653010) | |
| 640-805, gnl|rn3|chr7 (34661205-34661109) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-333, gnl|bosTau2|chr25 (32361715-32361383) | |
| 1-333, gnl|Hg17|chr7 (99854943-99855270) | |
| 1-333, gnl|Mm7|chr5 (136518605-136518273) | |
| 407-639, gnl|bosTau2|chr25 (32360865-32360633) | |
| 407-639, gnl|Hg17|chr7 (99855748-99855980) | |
| 407-639, gnl|Mm7|chr5 (136517828-136517596) | |
| 640-805, gnl|bosTau2|chr25 (32359920-32359755) | |
| 640-805, gnl|canFam2|chr6 (12086724-12086592) | |
| 640-805, gnl|canFam2|chr6 (12086756-12086594) | |
| 640-805, gnl|echTel1|scaffold_324334 (6460-6604) | |
| 640-805, gnl|echTel1|scaffold_324334 (6440-6602) | |
| 640-805, gnl|hg17|chr12 (90434239-90434369) | |
| 640-805, gnl|hg17|chr7 (99857143-99857305) | |
| 640-805, gnl|Hg17|chr7 (99857141-99857306) | |
| 640-805, gnl|mm7|chr10 (96750941-96750843) | |
| 640-805, gnl|mm7|chr5 (136515583-136515421) | |
| 640-805, gnl|Mm7|chr5 (136515583-136515418) | |
| 640-805, gnl|monDom2|scaffold_66 (2467919-2468046) | |
| 640-805, gnl|oryCun1|scaffold_196605 (26865-26703) | |
| 640-805, gnl|oryCun1|scaffold_55924 (1207-1332) | |
| 640-805, gnl|panTro1|chr10 (92604940-92605070) | |
| 640-805, gnl|panTro1|chr6 (101631965-101632127) | |
| 640-805, gnl|rheMac2|chr11 (92730688-92730818) | |
| 640-805, gnl|rheMac2|chr3 (47797889-47798051) | |
| 640-805, gnl|rn3|chr12 (19653172-19653010) | |
| 640-805, gnl|rn3|chr7 (34661205-34661109) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| pla (0.401016) | |
| cov (0.396458) | |
| ese (0.379507) | |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| cov (0.396458) | |
| ese (0.379507) | |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |