Non-Coding RNA Search

Ss1.1-rese11c_i18.5

Sequence:


               
               TTCTTTTTTTTTTTTTTCCTTTCCTCTCCTCCTCCCCTCTTGCATTCAAGATTATGAAAC
TTTGCTGTGGGCCCTGCCCTTCCTTCTCCTCCTCCTGTTCACCCTGGTGGTGTGGGTGAG
GTGGGGAGGGGGGACCCCCAAATATATATCAGCCCAACAGCCCTAAGTCTCCTCCTTTAT
TATTAGGAAACAAAACAACAACAACAAAAAATGGTGTCATGAACATGAACAGCATTGTCA
GATGAATTAGTTGAAGTGTTTTTTTTTTTTTTTTTTTGTACTGTGTCTTCAAATTTAATG
GATTAATGTGTCTTGTATATATAAAAAGAAAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTTTTTTTTTTTTCCTTTCCTCTCCTCCTCCCCTCTTGCATTCAAGATTATGAAAC
TTTGCTGTGGGCCCTGCCCTTCCTTCTCCTCCTCCTGTTCACCCTGGTGGTGTGGGTGAG
GTGGGGAGGGGGGACCCCCAAATATATATCAGCCCAACAGCCCTAAGTCTCCTCCTTTAT
TATTAGGAAACAAAACAACAACAACAAAAAATGGTGTCATGAACATGAACAGCATTGTCA
GATGAATTAGTTGAAGTGTTTTTTTTTTTTTTTTTTTGTACTGTGTCTTCAAATTTAATG
GATTAATGTGTCTTGTATATATAAAAAGAAAACCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               30-147, - strand, RNAz p=0.935361
               

               
               40-208, - strand, RNAz p=0.656743

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-147, - strand, RNAz p=0.935361
               

               
               40-208, - strand, RNAz p=0.656743

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-336, gnl|bosTau2|chr3 (8362998-8363331)
               

               
               1-336, gnl|canFam2|chr7 (45948377-45948565)
               

               
               1-336, gnl|dasNov1|scaffold_26030 (5040-4825)
               

               
               1-336, gnl|echTel1|scaffold_319936 (58503-58711)
               

               
               1-336, gnl|hg17|chr1 (23728145-23728372)
               

               
               1-336, gnl|Hg17|chr1 (151056051-151056394)
               

               
               1-336, gnl|loxAfr1|scaffold_1889 (34378-34593)
               

               
               1-336, gnl|mm7|chr3 (90131021-90131263)
               

               
               1-336, gnl|Mm7|chr3 (90131347-90130947)
               

               
               1-336, gnl|monDom2|scaffold_59 (3812724-3812933)
               

               
               1-336, gnl|oryCun1|scaffold_83006 (1638-1424)
               

               
               1-336, gnl|panTro1|chr1 (24112708-24112935)
               

               
               1-336, gnl|rheMac2|chr1 (26265924-26266134)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-336, gnl|bosTau2|chr3 (8362998-8363331)
               

               
               1-336, gnl|canFam2|chr7 (45948377-45948565)
               

               
               1-336, gnl|dasNov1|scaffold_26030 (5040-4825)
               

               
               1-336, gnl|echTel1|scaffold_319936 (58503-58711)
               

               
               1-336, gnl|hg17|chr1 (23728145-23728372)
               

               
               1-336, gnl|Hg17|chr1 (151056051-151056394)
               

               
               1-336, gnl|loxAfr1|scaffold_1889 (34378-34593)
               

               
               1-336, gnl|mm7|chr3 (90131021-90131263)
               

               
               1-336, gnl|Mm7|chr3 (90131347-90130947)
               

               
               1-336, gnl|monDom2|scaffold_59 (3812724-3812933)
               

               
               1-336, gnl|oryCun1|scaffold_83006 (1638-1424)
               

               
               1-336, gnl|panTro1|chr1 (24112708-24112935)
               

               
               1-336, gnl|rheMac2|chr1 (26265924-26266134)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	30-147, - strand, RNAz p=0.935361
	40-208, - strand, RNAz p=0.656743

	1-336, gnl\|bosTau2\|chr3 (8362998-8363331)
	1-336, gnl\|canFam2\|chr7 (45948377-45948565)
	1-336, gnl\|dasNov1\|scaffold_26030 (5040-4825)
	1-336, gnl\|echTel1\|scaffold_319936 (58503-58711)
	1-336, gnl\|hg17\|chr1 (23728145-23728372)
	1-336, gnl\|Hg17\|chr1 (151056051-151056394)
	1-336, gnl\|loxAfr1\|scaffold_1889 (34378-34593)
	1-336, gnl\|mm7\|chr3 (90131021-90131263)
	1-336, gnl\|Mm7\|chr3 (90131347-90130947)
	1-336, gnl\|monDom2\|scaffold_59 (3812724-3812933)
	1-336, gnl\|oryCun1\|scaffold_83006 (1638-1424)
	1-336, gnl\|panTro1\|chr1 (24112708-24112935)
	1-336, gnl\|rheMac2\|chr1 (26265924-26266134)

	fbs (0.175346)
	fhi (0.169578)
	cag (0.151194)
	fat (0.147427)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	nbm (0.0993246)
	eje (0.0988338)