Non-Coding RNA Search

Ss1.1-rese11c_n5.5

Sequence:


               
               GAAGCTCAAGTCTCCTCATCCACCGAGAAGTCCATGCAGATGAGAAGCCTTATAAGTGCG
ACAAGTGTGGGAAAGGCTTCACGAGGAGTTCAAGTCTGCTTATTCATCACTCAGTCCACA
CAGGTGAGAAGCCTTACAAATGTGACAAGTGCGGGAAGGGCTTTACTCAGAGCTCCAAAC
TGCACATCCACCAGCGTGTGCATACTGGTGAGAAGCCCTATGAGTGCGGGGAGTGTGGTA
TGAGCTTCAGTCAGCGCTCCAACCTGCATATCCACCAGCGCATCCACACAGGCGAGAGGC
CCTACAAGTGTGGGGAGTGTGGGAAGGGCTTTAGTCAGAGTTCAAACCTTCACATCCACC
GGTGCACACACACGGGGGAGAAGCCTTACCAGTGCTATGAGTGTGGGAAGGGCTTCAGCC
AGAGCTCAGACCTCCGCATCCACCTCAGAGTCCATACTGGAGAGAAGCCCTATCACTGTG
GCAAGTGTGGGAAGGGATTTAGCCAGAGTTCCAAACTCCTCATCCACCAGAGAGTCCACA
CCGGAGAGAAGCCCTACGAGTGCAGCAAGTGTGGGAAGGGCTTCAGCCAGAGCTCCAACC
TCCACATCCACCAGCGGGTCCACCGGAAAGATCCTCATTAAATGAGGTCTTCAGTCACAT
GCTCGTACTCTCAAGAAATAAATGTTTTTTAACATTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTCAAGTCTCCTCATCCACCGAGAAGTCCATGCAGATGAGAAGCCTTATAAGTGCG
ACAAGTGTGGGAAAGGCTTCACGAGGAGTTCAAGTCTGCTTATTCATCACTCAGTCCACA
CAGGTGAGAAGCCTTACAAATGTGACAAGTGCGGGAAGGGCTTTACTCAGAGCTCCAAAC
TGCACATCCACCAGCGTGTGCATACTGGTGAGAAGCCCTATGAGTGCGGGGAGTGTGGTA
TGAGCTTCAGTCAGCGCTCCAACCTGCATATCCACCAGCGCATCCACACAGGCGAGAGGC
CCTACAAGTGTGGGGAGTGTGGGAAGGGCTTTAGTCAGAGTTCAAACCTTCACATCCACC
GGTGCACACACACGGGGGAGAAGCCTTACCAGTGCTATGAGTGTGGGAAGGGCTTCAGCC
AGAGCTCAGACCTCCGCATCCACCTCAGAGTCCATACTGGAGAGAAGCCCTATCACTGTG
GCAAGTGTGGGAAGGGATTTAGCCAGAGTTCCAAACTCCTCATCCACCAGAGAGTCCACA
CCGGAGAGAAGCCCTACGAGTGCAGCAAGTGTGGGAAGGGCTTCAGCCAGAGCTCCAACC
TCCACATCCACCAGCGGGTCCACCGGAAAGATCCTCATTAAATGAGGTCTTCAGTCACAT
GCTCGTACTCTCAAGAAATAAATGTTTTTTAACATTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|49087122|ref|NP_032642.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49087122|ref|NP_032642.2|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-617, gnl|bosTau2|chr13 (24162614-24163229)
               

               
               1-617, gnl|Hg17|chr20 (18244338-18244953)
               

               
               1-617, gnl|Mm7|chr5 (142277915-142278530)
               


               
               12-602, gnl|bosTau2|chr13 (24162456-24163046)
               

               
               12-602, gnl|Hg17|chr20 (18244180-18244770)
               

               
               12-602, gnl|Mm7|chr5 (142277788-142278347)
               


               
               21-595, gnl|bosTau2|chr10 (8996699-8996125)
               

               
               21-595, gnl|Hg17|chr19 (42818504-42817846)
               

               
               21-595, gnl|Mm7|chr2 (127310130-127309640)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-617, gnl|bosTau2|chr13 (24162614-24163229)
               

               
               1-617, gnl|Hg17|chr20 (18244338-18244953)
               

               
               1-617, gnl|Mm7|chr5 (142277915-142278530)
               


               
               12-602, gnl|bosTau2|chr13 (24162456-24163046)
               

               
               12-602, gnl|Hg17|chr20 (18244180-18244770)
               

               
               12-602, gnl|Mm7|chr5 (142277788-142278347)
               


               
               21-595, gnl|bosTau2|chr10 (8996699-8996125)
               

               
               21-595, gnl|Hg17|chr19 (42818504-42817846)
               

               
               21-595, gnl|Mm7|chr2 (127310130-127309640)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ese (0.126502)

	1-617, gnl\|bosTau2\|chr13 (24162614-24163229)
	1-617, gnl\|Hg17\|chr20 (18244338-18244953)
	1-617, gnl\|Mm7\|chr5 (142277915-142278530)

	12-602, gnl\|bosTau2\|chr13 (24162456-24163046)
	12-602, gnl\|Hg17\|chr20 (18244180-18244770)
	12-602, gnl\|Mm7\|chr5 (142277788-142278347)

	21-595, gnl\|bosTau2\|chr10 (8996699-8996125)
	21-595, gnl\|Hg17\|chr19 (42818504-42817846)
	21-595, gnl\|Mm7\|chr2 (127310130-127309640)