Non-Coding RNA Search

Ss1.1-rese11c_o16.5

Sequence:


               
               GGACCTTCCTGAGGACAGAAGGGACTAGAGCTCCTGCCAGGTCTTGGGAAGACCCAGAGC
CGCCTTCTGGCACAGCCTGCACCTGTGGGCTCTGCACATGTTCCTGGCAGCCGAGCCTGT
GTCCACCCGCTCCCAGCCAGGGTCTGGGGTCTTCTGAGCTGGCCCGAGGCTACTTTCTCT
TCCTGGCTGGGTCTGGAACGGCTGCCTCCTCGCCTGCCAGGGCTTGGCCTTGGGGTCCTG
CCCTTCGAGTATAGGGGGTAGTGACCATAGCTTGGGGAGCCGGGGAGAGGACAGTTAGGT
GTCTTGGCTGTTCCTCCTCTTTCCCTTCTTTTAGCAATAAGTTTGGGGTGAGGTGGGAGG
GTGTTGAAGGAGGGAGGTGGGCAGAGAGGCTCTTTGGGGCCTGACGGCAGCGGAGGCTGG
AGAAGGGGCTCTTCTGTCTTCAGGGTCAGGTGGGAAGTGCTGAGGAGCTCTGAGGGTGCC
CACTGCCCAAAAGCTTAGAGAAAGGGTTGGGAACATATGCAGACATGGGTTTATTTTTCA
ATGTTTTTAAAAAATAAATAAAACCTTCAAGCTCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTTCCTGAGGACAGAAGGGACTAGAGCTCCTGCCAGGTCTTGGGAAGACCCAGAGC
CGCCTTCTGGCACAGCCTGCACCTGTGGGCTCTGCACATGTTCCTGGCAGCCGAGCCTGT
GTCCACCCGCTCCCAGCCAGGGTCTGGGGTCTTCTGAGCTGGCCCGAGGCTACTTTCTCT
TCCTGGCTGGGTCTGGAACGGCTGCCTCCTCGCCTGCCAGGGCTTGGCCTTGGGGTCCTG
CCCTTCGAGTATAGGGGGTAGTGACCATAGCTTGGGGAGCCGGGGAGAGGACAGTTAGGT
GTCTTGGCTGTTCCTCCTCTTTCCCTTCTTTTAGCAATAAGTTTGGGGTGAGGTGGGAGG
GTGTTGAAGGAGGGAGGTGGGCAGAGAGGCTCTTTGGGGCCTGACGGCAGCGGAGGCTGG
AGAAGGGGCTCTTCTGTCTTCAGGGTCAGGTGGGAAGTGCTGAGGAGCTCTGAGGGTGCC
CACTGCCCAAAAGCTTAGAGAAAGGGTTGGGAACATATGCAGACATGGGTTTATTTTTCA
ATGTTTTTAAAAAATAAATAAAACCTTCAAGCTCAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-392, + strand, RNAz p=0.999561

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-392, + strand, RNAz p=0.999561

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               282-406, + strand, RNAmicro p=0.996931

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               282-406, + strand, RNAmicro p=0.996931

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-575, gnl|bosTau2|chr29 (30628835-30628302)
               

               
               12-575, gnl|Hg17|chr11 (63435837-63435273)
               

               
               12-575, gnl|Mm7|chr19 (7094583-7095078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-575, gnl|bosTau2|chr29 (30628835-30628302)
               

               
               12-575, gnl|Hg17|chr11 (63435837-63435273)
               

               
               12-575, gnl|Mm7|chr19 (7094583-7095078)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	12-575, gnl\|bosTau2\|chr29 (30628835-30628302)
	12-575, gnl\|Hg17\|chr11 (63435837-63435273)
	12-575, gnl\|Mm7\|chr19 (7094583-7095078)