Ss1.1-rese12c_a20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGACTGCTTGGGGCTTGTGCTGACTGAGCGGAGCCCGCAGTGCCGGTATGGTGCTACTG GAGAGTGAGCAGTTCCTGACGGAGCTGACGAGGCTCTTCCAGAAGTGCCGGTTGTCGGGC AGCGTCTTCATCACCCTGAAGAAATATGATGGTCGAACTAAACCCATTCCAAGGAAAGGT TCTGTGGAGGGATTTGAGCCCGCGGACAACAAGTGTCTATTAAGAGCTACTGATGGGAAA AAGAAGATCAGCACTGTGGTGAGCTCCAAAGAAGTGAATAAGTTTCAGATGGCTTATTCG AACCTGTTGAGAGCTAACATGGATGGGTTGAAGAAGAGGGACAAAAAGAGCAAGAGTAAG AAGAGCAAAGCAGCACAGTAAAGGGCATCAGATTTCCCGCCTTCACCAACTAACCACTGA GTTGCTGTTTTTCATTTGGTTTTTACTTTCGGCTACAAAGCTGGGTTTTTGATTCCCGTA CAATAACTGTTTTCATGTGAGATTAGGGTCACTTTTGGATGGAAGAAAGGCTGCATTGTT TACAGGGTAGTTTATTTTAGAAGCCAATTTATTTTAGATCTGGCTAAGTGGTCTGTGTTG TATGTTTGTTTATTCCTGGATTATAGTTTAGAGTCTCTGTAGCCTGTGAAGAGCACTGTA CCATTAAACCTGTATTTATCATCACTATCTTTTATTCCTTTTCCCACTCCATAAAAAGTT TCTGGCAATAGCTACTCATTCTGGAATGGTGGGATTACAAATAGGCTTTAGGCCCTATCT TGTGGGTTATTGGAATTGAAACCTGACAATTTTACAAAAAGCTGTGTTATTTCATGGGTG TTTTTCCCAACCGTTAGTGTAATTTTGTTTTCTTAGTTCCTTTAGCAAATTCGAATGAGT TCTCATAGCCAATTGAGAGTTTGCTTAACAAAACTTAGTTTATGACAAAATCATCAAGAA TAAAGATCCCAGGTTAATGAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGACTGCTTGGGGCTTGTGCTGACTGAGCGGAGCCCGCAGTGCCGGTATGGTGCTACTG GAGAGTGAGCAGTTCCTGACGGAGCTGACGAGGCTCTTCCAGAAGTGCCGGTTGTCGGGC AGCGTCTTCATCACCCTGAAGAAATATGATGGTCGAACTAAACCCATTCCAAGGAAAGGT TCTGTGGAGGGATTTGAGCCCGCGGACAACAAGTGTCTATTAAGAGCTACTGATGGGAAA AAGAAGATCAGCACTGTGGTGAGCTCCAAAGAAGTGAATAAGTTTCAGATGGCTTATTCG AACCTGTTGAGAGCTAACATGGATGGGTTGAAGAAGAGGGACAAAAAGAGCAAGAGTAAG AAGAGCAAAGCAGCACAGTAAAGGGCATCAGATTTCCCGCCTTCACCAACTAACCACTGA GTTGCTGTTTTTCATTTGGTTTTTACTTTCGGCTACAAAGCTGGGTTTTTGATTCCCGTA CAATAACTGTTTTCATGTGAGATTAGGGTCACTTTTGGATGGAAGAAAGGCTGCATTGTT TACAGGGTAGTTTATTTTAGAAGCCAATTTATTTTAGATCTGGCTAAGTGGTCTGTGTTG TATGTTTGTTTATTCCTGGATTATAGTTTAGAGTCTCTGTAGCCTGTGAAGAGCACTGTA CCATTAAACCTGTATTTATCATCACTATCTTTTATTCCTTTTCCCACTCCATAAAAAGTT TCTGGCAATAGCTACTCATTCTGGAATGGTGGGATTACAAATAGGCTTTAGGCCCTATCT TGTGGGTTATTGGAATTGAAACCTGACAATTTTACAAAAAGCTGTGTTATTTCATGGGTG TTTTTCCCAACCGTTAGTGTAATTTTGTTTTCTTAGTTCCTTTAGCAAATTCGAATGAGT TCTCATAGCCAATTGAGAGTTTGCTTAACAAAACTTAGTTTATGACAAAATCATCAAGAA TAAAGATCCCAGGTTAATGAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 146-263, gnl|bosTau2|chr10 (23248304-23248421) | |
| 146-263, gnl|canFam2|chr18 (32673210-32673285) | |
| 146-263, gnl|canFam2|chr30 (10247308-10247438) | |
| 146-263, gnl|danRer3|chrUn (24155005-24155125) | |
| 146-263, gnl|danRer3|chrUn (24155122-24155047) | |
| 146-263, gnl|dasNov1|scaffold_123817 (5507-5637) | |
| 146-263, gnl|dasNov1|scaffold_269088 (632-683) | |
| 146-263, gnl|echTel1|scaffold_210399 (9-84) | |
| 146-263, gnl|echTel1|scaffold_316524 (1602-1472) | |
| 146-263, gnl|fr1|chrUn (60025438-60025568) | |
| 146-263, gnl|fr1|chrUn (60025565-60025490) | |
| 146-263, gnl|hg17|chr11 (92908380-92908455) | |
| 146-263, gnl|hg17|chr15 (38117761-38117891) | |
| 146-263, gnl|Hg17|chr15 (38117887-38117770) | |
| 146-263, gnl|loxAfr1|scaffold_2762 (26565-26435) | |
| 146-263, gnl|loxAfr1|scaffold_2762 (26438-26513) | |
| 146-263, gnl|mm7|chr13 (81236663-81236738) | |
| 146-263, gnl|mm7|chr2 (118219756-118219886) | |
| 146-263, gnl|Mm7|chr2 (118219882-118219765) | |
| 146-263, gnl|monDom2|scaffold_11 (9232555-9232478) | |
| 146-263, gnl|monDom2|scaffold_12 (2696151-2696008) | |
| 146-263, gnl|oryCun1|scaffold_198559 (64650-64739) | |
| 146-263, gnl|oryCun1|scaffold_209781 (144094-143964) | |
| 146-263, gnl|panTro1|chr16 (38001773-38001903) | |
| 146-263, gnl|panTro1|chr9 (94808120-94808195) | |
| 146-263, gnl|rheMac2|chr7 (18389626-18389756) | |
| 146-263, gnl|rheMac2|chr7 (18389753-18389678) | |
| 146-263, gnl|rn3|chr3 (104806096-104806226) | |
| 146-263, gnl|rn3|chr9 (84896542-84896617) | |
| 146-263, gnl|tetNig1|chr10 (3824844-3824974) | |
| 146-263, gnl|tetNig1|chr10 (3824971-3824896) | |
| 291-980, gnl|bosTau2|chr10 (23250186-23250880) | |
| 291-980, gnl|Hg17|chr15 (38115994-38115230) | |
| 291-980, gnl|Mm7|chr2 (118217157-118216242) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-263, gnl|bosTau2|chr10 (23248304-23248421) | |
| 146-263, gnl|canFam2|chr18 (32673210-32673285) | |
| 146-263, gnl|canFam2|chr30 (10247308-10247438) | |
| 146-263, gnl|danRer3|chrUn (24155005-24155125) | |
| 146-263, gnl|danRer3|chrUn (24155122-24155047) | |
| 146-263, gnl|dasNov1|scaffold_123817 (5507-5637) | |
| 146-263, gnl|dasNov1|scaffold_269088 (632-683) | |
| 146-263, gnl|echTel1|scaffold_210399 (9-84) | |
| 146-263, gnl|echTel1|scaffold_316524 (1602-1472) | |
| 146-263, gnl|fr1|chrUn (60025438-60025568) | |
| 146-263, gnl|fr1|chrUn (60025565-60025490) | |
| 146-263, gnl|hg17|chr11 (92908380-92908455) | |
| 146-263, gnl|hg17|chr15 (38117761-38117891) | |
| 146-263, gnl|Hg17|chr15 (38117887-38117770) | |
| 146-263, gnl|loxAfr1|scaffold_2762 (26565-26435) | |
| 146-263, gnl|loxAfr1|scaffold_2762 (26438-26513) | |
| 146-263, gnl|mm7|chr13 (81236663-81236738) | |
| 146-263, gnl|mm7|chr2 (118219756-118219886) | |
| 146-263, gnl|Mm7|chr2 (118219882-118219765) | |
| 146-263, gnl|monDom2|scaffold_11 (9232555-9232478) | |
| 146-263, gnl|monDom2|scaffold_12 (2696151-2696008) | |
| 146-263, gnl|oryCun1|scaffold_198559 (64650-64739) | |
| 146-263, gnl|oryCun1|scaffold_209781 (144094-143964) | |
| 146-263, gnl|panTro1|chr16 (38001773-38001903) | |
| 146-263, gnl|panTro1|chr9 (94808120-94808195) | |
| 146-263, gnl|rheMac2|chr7 (18389626-18389756) | |
| 146-263, gnl|rheMac2|chr7 (18389753-18389678) | |
| 146-263, gnl|rn3|chr3 (104806096-104806226) | |
| 146-263, gnl|rn3|chr9 (84896542-84896617) | |
| 146-263, gnl|tetNig1|chr10 (3824844-3824974) | |
| 146-263, gnl|tetNig1|chr10 (3824971-3824896) | |
| 291-980, gnl|bosTau2|chr10 (23250186-23250880) | |
| 291-980, gnl|Hg17|chr15 (38115994-38115230) | |
| 291-980, gnl|Mm7|chr2 (118217157-118216242) |
| Expressed library(ies): 60 entry(ies) | More info |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
| cje (1.15664) | |
| sug (1.14562) | |
| lyg (0.931718) | |
| cte (0.87822) | |
| cki (0.826173) | |
| spc (0.793561) | |
| cmu (0.745573) | |
| sto (0.719295) | |
| pgl (0.7109) | |
| gul (0.710353) | |
| fco (0.628832) | |
| sme (0.610874) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| ski (0.440205) | |
| che (0.408942) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| col (0.390016) | |
| ova (0.387397) | |
| med (0.348756) | |
| rec (0.346141) | |
| eye (0.341006) | |
| cut (0.339847) | |
| mga (0.32041) | |
| cty (0.31224) | |
| lin (0.291206) | |
| spl (0.286369) | |
| csk (0.281492) | |
| cst (0.280073) | |
| fce (0.271592) | |
| ste (0.270416) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| pla (0.133672) | |
| ute (0.132784) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 60 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (1.15664) | |
| sug (1.14562) | |
| lyg (0.931718) | |
| cte (0.87822) | |
| cki (0.826173) | |
| spc (0.793561) | |
| cmu (0.745573) | |
| sto (0.719295) | |
| pgl (0.7109) | |
| gul (0.710353) | |
| fco (0.628832) | |
| sme (0.610874) | |
| mgp (0.461361) | |
| isp (0.451128) | |
| ski (0.440205) | |
| che (0.408942) | |
| ssp (0.406559) | |
| aor (0.390549) | |
| col (0.390016) | |
| ova (0.387397) | |
| med (0.348756) | |
| rec (0.346141) | |
| eye (0.341006) | |
| cut (0.339847) | |
| mga (0.32041) | |
| cty (0.31224) | |
| lin (0.291206) | |
| spl (0.286369) | |
| csk (0.281492) | |
| cst (0.280073) | |
| fce (0.271592) | |
| ste (0.270416) | |
| kid (0.259471) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| pla (0.133672) | |
| ute (0.132784) | |
| thg (0.126791) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) |