Ss1.1-rese12c_c20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGCACGAACCGCCTTTATTGGC TCACAGATCCAACGACGGGACAGGCTGCCGCAGAGACCACCCGAACCTCTCCTGCTCACC CCCAGCAGGGCAGCCTCAGCCCCTTGTGCAGGAGCCGGGGTTGGGGTGGTGGGCGCGGAC CCTACAGTGGGGGCAGAGGGAAAGGGCCTCCCCGGCCCTGTTGACAATGTCCTGGGAAGG ACCCTGGGCGGGTCACGCAGGGGCCTCCTGGGCCATGGGTCAGGCCAGTGGGTGTCCTGG GACTGGACGTGGTTGAGGTGGGAGCATGAGTGGGCCATCAAAGCAGAAGGGCCGCAAGAG TCTGCCCACAGGGGGCACCCCGGCCGGCCTCCGCGTGGCAGTTGGCTAAGGCACAGTGGC TGGGCCATGTCCCGCTGCAGAAAGCCAGAGACGCACGGGGACCCTGACCCTCTCGGGACG TCTGGCTGACAGAAGGAGGCTACTTTTTCCGCCGGGGGGTCTGAGAACGGCTGCTGTTAC TGGGAGCTGGGGCAGCTTGCTTGCTGGTGGCTCCTGAGTCCTCCCTGGGGGCTGGCCTCT GCTTCTCCCTGGCGGGAGGGGAGGGCCGAGGGCCCAGGAGGGCCTGCATGACCCTAATGG CCCCCACCGTCGCGAGGAGCCCCCAGAGCAGGGTGGGGGCCTCCAGGGGAGACAGCTGTT TCCGCACCCAGTAGAGGGCTTCGGTCAGGGGACTGCTGGAGCTGCGGGCCCGCGGGGGGC TCTTGTCCTGAAGGCCGAACTGTCTGAGCAGTGTTTCCAGCGTCGGGTCCCCCAGCGACA CCGCAGGGAAAAATTCCTCCACCCACTGGCGGCGCCACCACCGGCCCTGCTCCCCGGGCT GCGAGAACCAGTACTTATAGAGCTGGGCCCGCACGTAAGTGGGCGGCTGCTTGTGGAAGG GGTACGTGGGCGCGTGGTTCTGGATGAGGCGAATCACGGGCTCCTTGCCCTGCAGTAGGC GGAGCACCAGGCTCGTGAACCAGGGACTCTGTGTGTGCGGACCCAGGGCCGCGAACCACA TCTGCCAATCGAGGCGTGGCTGGTGGGGCGTCACGACAGGGGGTGCCCGGCTCACGTTCC CGGGCTTGTACATGAACTCGATCTCCGTCCAGTGGTGCCCATCATAGCTGCCCTCCAGCA CCACCTCAGGCCGCCCGCCCAGGCCAGTCATCCTGCGGAACAGGCCATAGGAGTTGGCCA GCTGGAGGTGCTCCACGGTGCCGAACAGGCGGTGGGCCCCGGTCCAGAGGCGCCCATGGG TGGAGGGCTCCATGTAGGAGTATGGCACCAGGCTGATCATGAACAGAGCCACCGTGGCAG CGCCAAAGATGGACAGTTGGGCTGCCGCACAGAACTTCTGCAGCCACCCCCGCACCTGGG TCCACCTCCAGAGCGCGGTCAGCAGTTCCCAGGCAAGGGAGGCTGCCCCCAGCCACATGG TGGGCAGGGACACCGTCTTCAGCCACTGGGAGAACTGGTGGAAGGTGAAGGTGGTTCTGG AGTGAATGGCATACTGCTCCCAGTCCACCTCCAGGCCGAAGCAGTGCACCACGCCGTAGG CCAGCAGCCCGTAGATGGCCAATTCCAGCAGCAGGGCCAGCATAGCCAGCAGAGCCCTGG GCCAGGAGGTGGGCATCTTCTTGCGCCGGCTGCTGCCAGACTCGGCCAGCAGGTGTACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGCACGAACCGCCTTTATTGGC TCACAGATCCAACGACGGGACAGGCTGCCGCAGAGACCACCCGAACCTCTCCTGCTCACC CCCAGCAGGGCAGCCTCAGCCCCTTGTGCAGGAGCCGGGGTTGGGGTGGTGGGCGCGGAC CCTACAGTGGGGGCAGAGGGAAAGGGCCTCCCCGGCCCTGTTGACAATGTCCTGGGAAGG ACCCTGGGCGGGTCACGCAGGGGCCTCCTGGGCCATGGGTCAGGCCAGTGGGTGTCCTGG GACTGGACGTGGTTGAGGTGGGAGCATGAGTGGGCCATCAAAGCAGAAGGGCCGCAAGAG TCTGCCCACAGGGGGCACCCCGGCCGGCCTCCGCGTGGCAGTTGGCTAAGGCACAGTGGC TGGGCCATGTCCCGCTGCAGAAAGCCAGAGACGCACGGGGACCCTGACCCTCTCGGGACG TCTGGCTGACAGAAGGAGGCTACTTTTTCCGCCGGGGGGTCTGAGAACGGCTGCTGTTAC TGGGAGCTGGGGCAGCTTGCTTGCTGGTGGCTCCTGAGTCCTCCCTGGGGGCTGGCCTCT GCTTCTCCCTGGCGGGAGGGGAGGGCCGAGGGCCCAGGAGGGCCTGCATGACCCTAATGG CCCCCACCGTCGCGAGGAGCCCCCAGAGCAGGGTGGGGGCCTCCAGGGGAGACAGCTGTT TCCGCACCCAGTAGAGGGCTTCGGTCAGGGGACTGCTGGAGCTGCGGGCCCGCGGGGGGC TCTTGTCCTGAAGGCCGAACTGTCTGAGCAGTGTTTCCAGCGTCGGGTCCCCCAGCGACA CCGCAGGGAAAAATTCCTCCACCCACTGGCGGCGCCACCACCGGCCCTGCTCCCCGGGCT GCGAGAACCAGTACTTATAGAGCTGGGCCCGCACGTAAGTGGGCGGCTGCTTGTGGAAGG GGTACGTGGGCGCGTGGTTCTGGATGAGGCGAATCACGGGCTCCTTGCCCTGCAGTAGGC GGAGCACCAGGCTCGTGAACCAGGGACTCTGTGTGTGCGGACCCAGGGCCGCGAACCACA TCTGCCAATCGAGGCGTGGCTGGTGGGGCGTCACGACAGGGGGTGCCCGGCTCACGTTCC CGGGCTTGTACATGAACTCGATCTCCGTCCAGTGGTGCCCATCATAGCTGCCCTCCAGCA CCACCTCAGGCCGCCCGCCCAGGCCAGTCATCCTGCGGAACAGGCCATAGGAGTTGGCCA GCTGGAGGTGCTCCACGGTGCCGAACAGGCGGTGGGCCCCGGTCCAGAGGCGCCCATGGG TGGAGGGCTCCATGTAGGAGTATGGCACCAGGCTGATCATGAACAGAGCCACCGTGGCAG CGCCAAAGATGGACAGTTGGGCTGCCGCACAGAACTTCTGCAGCCACCCCCGCACCTGGG TCCACCTCCAGAGCGCGGTCAGCAGTTCCCAGGCAAGGGAGGCTGCCCCCAGCCACATGG TGGGCAGGGACACCGTCTTCAGCCACTGGGAGAACTGGTGGAAGGTGAAGGTGGTTCTGG AGTGAATGGCATACTGCTCCCAGTCCACCTCCAGGCCGAAGCAGTGCACCACGCCGTAGG CCAGCAGCCCGTAGATGGCCAATTCCAGCAGCAGGGCCAGCATAGCCAGCAGAGCCCTGG GCCAGGAGGTGGGCATCTTCTTGCGCCGGCTGCTGCCAGACTCGGCCAGCAGGTGTACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 546-1549, + strand, RNAz p=0.995663 | |
| 1238-1352, + strand, RNAz p=0.508704 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 546-1549, + strand, RNAz p=0.995663 | |
| 1238-1352, + strand, RNAz p=0.508704 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 251-790, gnl|bosTau2|chr5 (75783195-75782665) | |
| 251-790, gnl|Hg17|chr22 (49231718-49232275) | |
| 251-790, gnl|Mm7|chr15 (89434215-89434768) | |
| 860-997, gnl|bosTau2|chr5 (75782431-75782294) | |
| 860-997, gnl|Hg17|chr22 (49232888-49233025) | |
| 860-997, gnl|Mm7|chr15 (89435005-89435143) | |
| 1162-1352, gnl|bosTau2|chr5 (75781935-75781745) | |
| 1162-1352, gnl|canFam2|chr10 (19792844-19792648) | |
| 1162-1352, gnl|danRer3|chr19 (18515594-18515398) | |
| 1162-1352, gnl|fr1|chrUn (21610565-21610760) | |
| 1162-1352, gnl|galGal2|chrUn (59575363-59575167) | |
| 1162-1352, gnl|hg17|chr22 (49233371-49233567) | |
| 1162-1352, gnl|Hg17|chr22 (49233371-49233561) | |
| 1162-1352, gnl|mm7|chr15 (89435478-89435674) | |
| 1162-1352, gnl|Mm7|chr15 (89435478-89435668) | |
| 1162-1352, gnl|monDom2|scaffold_119 (1048723-1048918) | |
| 1162-1352, gnl|oryCun1|scaffold_138846 (3965-3769) | |
| 1162-1352, gnl|panTro1|chr23 (49724356-49724552) | |
| 1162-1352, gnl|rheMac2|chr10 (94527204-94527400) | |
| 1162-1352, gnl|rn3|chr7 (127681814-127682010) | |
| 1162-1352, gnl|tetNig1|chr13 (3266935-3266739) | |
| 1162-1352, gnl|xenTro1|scaffold_534 (872301-872496) | |
| 1405-1549, gnl|bosTau2|chr5 (75781543-75781400) | |
| 1405-1549, gnl|Hg17|chr22 (49233756-49233905) | |
| 1405-1549, gnl|Mm7|chr15 (89435865-89436015) | |
| 1552-1686, gnl|bosTau2|chr5 (75781327-75781193) | |
| 1552-1686, gnl|Hg17|chr22 (49233976-49234110) | |
| 1552-1686, gnl|Mm7|chr15 (89436088-89436222) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 251-790, gnl|bosTau2|chr5 (75783195-75782665) | |
| 251-790, gnl|Hg17|chr22 (49231718-49232275) | |
| 251-790, gnl|Mm7|chr15 (89434215-89434768) | |
| 860-997, gnl|bosTau2|chr5 (75782431-75782294) | |
| 860-997, gnl|Hg17|chr22 (49232888-49233025) | |
| 860-997, gnl|Mm7|chr15 (89435005-89435143) | |
| 1162-1352, gnl|bosTau2|chr5 (75781935-75781745) | |
| 1162-1352, gnl|canFam2|chr10 (19792844-19792648) | |
| 1162-1352, gnl|danRer3|chr19 (18515594-18515398) | |
| 1162-1352, gnl|fr1|chrUn (21610565-21610760) | |
| 1162-1352, gnl|galGal2|chrUn (59575363-59575167) | |
| 1162-1352, gnl|hg17|chr22 (49233371-49233567) | |
| 1162-1352, gnl|Hg17|chr22 (49233371-49233561) | |
| 1162-1352, gnl|mm7|chr15 (89435478-89435674) | |
| 1162-1352, gnl|Mm7|chr15 (89435478-89435668) | |
| 1162-1352, gnl|monDom2|scaffold_119 (1048723-1048918) | |
| 1162-1352, gnl|oryCun1|scaffold_138846 (3965-3769) | |
| 1162-1352, gnl|panTro1|chr23 (49724356-49724552) | |
| 1162-1352, gnl|rheMac2|chr10 (94527204-94527400) | |
| 1162-1352, gnl|rn3|chr7 (127681814-127682010) | |
| 1162-1352, gnl|tetNig1|chr13 (3266935-3266739) | |
| 1162-1352, gnl|xenTro1|scaffold_534 (872301-872496) | |
| 1405-1549, gnl|bosTau2|chr5 (75781543-75781400) | |
| 1405-1549, gnl|Hg17|chr22 (49233756-49233905) | |
| 1405-1549, gnl|Mm7|chr15 (89435865-89436015) | |
| 1552-1686, gnl|bosTau2|chr5 (75781327-75781193) | |
| 1552-1686, gnl|Hg17|chr22 (49233976-49234110) | |
| 1552-1686, gnl|Mm7|chr15 (89436088-89436222) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| amn (0.417711) | |
| eep (0.367692) | |
| nlu (0.191681) | |
| eli (0.151814) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| eep (0.367692) | |
| nlu (0.191681) | |
| eli (0.151814) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cty (0.10408) | |
| jej (0.0989218) |