Non-Coding RNA Search

Ss1.1-rese12c_f8.5

Sequence:


               
               ACAAGAGCCGGTTCTTGCCTGGCTGGGTGGCAGCAAGCGGCCCTGAGCCCCGCCCCAGGC
CGGCAGGCGGAGAAGGAGCCGGTGGGGGTAGGGGGTGCGGTGGGGGGGTGGGGGTCCTCC
GGCGCTTGGGGGTCCCAGTCCCCGCCGGCTGCCGAGCGGGAGGGGTGGCGGAGGAGCCGC
AGAGATGTCCGGCCAGAGCTTGACGGACCGAATCACCGCCGCCCAGCACAGTGTCACCGG
CTCTGCCGTATCCAAGACAGTATGCAAGGCCACGACCCACGAGATCATGGGGCCCAAGAA
AAAGCACCTGGACTACTTAATTCAGTGCACAAATGAGATGAATGTGAATATCCCGCAGTT
GGCAGACAGTTTATTTGAAAGGACTACTAACAGTAGTTGGGTGGTGGTCTTCAAATCTCT
CATTACAACTCATCATTTGATGGTGTATGGAAATGAGCGTTTTATTCAGTATTTGGCTTC
AAGAAACACATTGTTTAACTTAAGCAATTTTTTGGATAAAAGTGGATTGCAAGGATATGA
CATGTCTACATTTATTAGGCGGTATAGTAGGTATCTAAATGAAAAAGCAGTTTCATACAG
ACAAGTTGCATTTGATTTCACAAAAGTGAAAAGAGGGGCTGATGGAGTTATGAGAACAAT
GAACACAGAAAAACTCCTAAAAACTGTACCAATTATTCAAAATCAAATGGATGCCCTTCT
TGATTTTAATGTTAATAGCAATGAACTTACAAATGGTGTTATAAATGCTGCCTTCATGCT
CCTGTTCAAAGATGCCATTAGACTGTTTGCAGCATACAATGAAGGAATTATTAACCTGTT
GGAAAAATATTTCGATATGAAAAAGAACCAATGCAAAGAAGGTCTTGACATCTATAAGAA
ATTCCTGACTAGGATGACAAGGATTTCAGAGTTTCTCAAAGTTGCAGAGCAAGTTGGAAT
TGACAGAGGTGATATACCAGATCTTTCACAGGCCCCCAGCAGTCTTCTTGATGCTTTGGA
ACAACATTTAGCTTCCTTGGAAGGGAAGAAAATCAAAGATTCTACAGCTGCAAGCAGGGC
AACAACACTTTCCAACGCAGTCTCTTCCCTGGCAAGCACTGGCCTGTCTCTTACCAAAGT
GGATGAAAGGGAAAAGCAGGCAGCATTAGAGGAAGAACAGGCTCGCTTAAAAGCTTTAAA
GGAACAGCGCCTAAAAGAACTTGCAAAGAAACCTCATACCTCTTTAACAACTGCAGCCTC
TCCTGTGTCCACCTCTGCAGGGGGTATAATGACTGCACCAGCCATTGATATATTTTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGAGCCGGTTCTTGCCTGGCTGGGTGGCAGCAAGCGGCCCTGAGCCCCGCCCCAGGC
CGGCAGGCGGAGAAGGAGCCGGTGGGGGTAGGGGGTGCGGTGGGGGGGTGGGGGTCCTCC
GGCGCTTGGGGGTCCCAGTCCCCGCCGGCTGCCGAGCGGGAGGGGTGGCGGAGGAGCCGC
AGAGATGTCCGGCCAGAGCTTGACGGACCGAATCACCGCCGCCCAGCACAGTGTCACCGG
CTCTGCCGTATCCAAGACAGTATGCAAGGCCACGACCCACGAGATCATGGGGCCCAAGAA
AAAGCACCTGGACTACTTAATTCAGTGCACAAATGAGATGAATGTGAATATCCCGCAGTT
GGCAGACAGTTTATTTGAAAGGACTACTAACAGTAGTTGGGTGGTGGTCTTCAAATCTCT
CATTACAACTCATCATTTGATGGTGTATGGAAATGAGCGTTTTATTCAGTATTTGGCTTC
AAGAAACACATTGTTTAACTTAAGCAATTTTTTGGATAAAAGTGGATTGCAAGGATATGA
CATGTCTACATTTATTAGGCGGTATAGTAGGTATCTAAATGAAAAAGCAGTTTCATACAG
ACAAGTTGCATTTGATTTCACAAAAGTGAAAAGAGGGGCTGATGGAGTTATGAGAACAAT
GAACACAGAAAAACTCCTAAAAACTGTACCAATTATTCAAAATCAAATGGATGCCCTTCT
TGATTTTAATGTTAATAGCAATGAACTTACAAATGGTGTTATAAATGCTGCCTTCATGCT
CCTGTTCAAAGATGCCATTAGACTGTTTGCAGCATACAATGAAGGAATTATTAACCTGTT
GGAAAAATATTTCGATATGAAAAAGAACCAATGCAAAGAAGGTCTTGACATCTATAAGAA
ATTCCTGACTAGGATGACAAGGATTTCAGAGTTTCTCAAAGTTGCAGAGCAAGTTGGAAT
TGACAGAGGTGATATACCAGATCTTTCACAGGCCCCCAGCAGTCTTCTTGATGCTTTGGA
ACAACATTTAGCTTCCTTGGAAGGGAAGAAAATCAAAGATTCTACAGCTGCAAGCAGGGC
AACAACACTTTCCAACGCAGTCTCTTCCCTGGCAAGCACTGGCCTGTCTCTTACCAAAGT
GGATGAAAGGGAAAAGCAGGCAGCATTAGAGGAAGAACAGGCTCGCTTAAAAGCTTTAAA
GGAACAGCGCCTAAAAGAACTTGCAAAGAAACCTCATACCTCTTTAACAACTGCAGCCTC
TCCTGTGTCCACCTCTGCAGGGGGTATAATGACTGCACCAGCCATTGATATATTTTCTAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13399999|pdb|1HFA|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13399999|pdb|1HFA|A

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-314, gnl|bosTau2|chr29 (5038846-5038519)
               

               
               5-314, gnl|Hg17|chr11 (85457648-85457341)
               

               
               5-314, gnl|Mm7|chr7 (86078832-86079139)
               


               
               717-856, gnl|bosTau2|chr29 (4949090-4948951)
               

               
               717-856, gnl|Hg17|chr11 (85401103-85400958)
               

               
               717-856, gnl|Mm7|chr7 (86177446-86177590)
               


               
               1076-1202, gnl|bosTau2|chr29 (4940324-4940198)
               

               
               1076-1202, gnl|Hg17|chr11 (85389851-85389725)
               

               
               1076-1202, gnl|Mm7|chr7 (86183163-86183289)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-314, gnl|bosTau2|chr29 (5038846-5038519)
               

               
               5-314, gnl|Hg17|chr11 (85457648-85457341)
               

               
               5-314, gnl|Mm7|chr7 (86078832-86079139)
               


               
               717-856, gnl|bosTau2|chr29 (4949090-4948951)
               

               
               717-856, gnl|Hg17|chr11 (85401103-85400958)
               

               
               717-856, gnl|Mm7|chr7 (86177446-86177590)
               


               
               1076-1202, gnl|bosTau2|chr29 (4940324-4940198)
               

               
               1076-1202, gnl|Hg17|chr11 (85389851-85389725)
               

               
               1076-1202, gnl|Mm7|chr7 (86183163-86183289)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	5-314, gnl\|bosTau2\|chr29 (5038846-5038519)
	5-314, gnl\|Hg17\|chr11 (85457648-85457341)
	5-314, gnl\|Mm7\|chr7 (86078832-86079139)

	717-856, gnl\|bosTau2\|chr29 (4949090-4948951)
	717-856, gnl\|Hg17\|chr11 (85401103-85400958)
	717-856, gnl\|Mm7\|chr7 (86177446-86177590)

	1076-1202, gnl\|bosTau2\|chr29 (4940324-4940198)
	1076-1202, gnl\|Hg17\|chr11 (85389851-85389725)
	1076-1202, gnl\|Mm7\|chr7 (86183163-86183289)

	nlu (0.191681)
	nmm (0.132802)
	ese (0.126502)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)