Non-Coding RNA Search

Ss1.1-rese12c_g7.5

Sequence:


               
               AAAAACCNGCTT------------AAGCCCAGGAGGCCTACTGGCACGTGTGTTGCCTCT
CCTGCACTGTCGAGTGCGCTACAGTCAGCTCCTGGGGCTGCACGAGCAGCTTCGGAAGGA
ATATGGGGCCAATGTGCTTCCTGCATTCCCCCCAAAGAAGCTTTTCTCTCTGACCCCTGC
TGAGGTAGAACAGAGAAGAGAGCAGTTAGAGAAGTACATGCAAGCCGGTGAGTGGTTGGA
GGGAACTTTAGGCTGACTCTGTTGAGGACTCCAGGGAGAGACTCAAAGCAGCTGGTTCTG
TAGAAGGTTCTGAAGTAGTTTCTAGATCTGGGAGGCCTCTTGTTTGATGTATTGTTTAAT
TACCAAAAGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACCNGCTT------------AAGCCCAGGAGGCCTACTGGCACGTGTGTTGCCTCT
CCTGCACTGTCGAGTGCGCTACAGTCAGCTCCTGGGGCTGCACGAGCAGCTTCGGAAGGA
ATATGGGGCCAATGTGCTTCCTGCATTCCCCCCAAAGAAGCTTTTCTCTCTGACCCCTGC
TGAGGTAGAACAGAGAAGAGAGCAGTTAGAGAAGTACATGCAAGCCGGTGAGTGGTTGGA
GGGAACTTTAGGCTGACTCTGTTGAGGACTCCAGGGAGAGACTCAAAGCAGCTGGTTCTG
TAGAAGGTTCTGAAGTAGTTTCTAGATCTGGGAGGCCTCTTGTTTGATGTATTGTTTAAT
TACCAAAAGTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-255, - strand, RNAz p=0.962582

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-255, - strand, RNAz p=0.962582

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               96-300, gnl|bosTau2|chr11 (51979868-51979667)
               

               
               96-300, gnl|canFam2|chr17 (24308530-24308675)
               

               
               96-300, gnl|danRer3|chr20 (19804220-19804074)
               

               
               96-300, gnl|dasNov1|scaffold_2559 (62839-62694)
               

               
               96-300, gnl|echTel1|scaffold_310269 (84570-84707)
               

               
               96-300, gnl|fr1|chrUn (289721946-289721806)
               

               
               96-300, gnl|galGal2|chr3 (102654019-102653883)
               

               
               96-300, gnl|hg17|chr2 (27507124-27507269)
               

               
               96-300, gnl|Hg17|chr2 (27507139-27507342)
               

               
               96-300, gnl|loxAfr1|scaffold_3331 (21275-21130)
               

               
               96-300, gnl|mm7|chr5 (30227295-30227440)
               

               
               96-300, gnl|Mm7|chr5 (30227310-30227508)
               

               
               96-300, gnl|monDom2|scaffold_1 (148858013-148857866)
               

               
               96-300, gnl|oryCun1|scaffold_203841 (276-131)
               

               
               96-300, gnl|panTro1|chr12 (28450375-28450520)
               

               
               96-300, gnl|rheMac2|chr13 (27367709-27367854)
               

               
               96-300, gnl|rn3|chr6 (25161016-25160871)
               

               
               96-300, gnl|tetNig1|chr14 (5534221-5534356)
               

               
               96-300, gnl|xenTro1|scaffold_1432 (136061-136204)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-300, gnl|bosTau2|chr11 (51979868-51979667)
               

               
               96-300, gnl|canFam2|chr17 (24308530-24308675)
               

               
               96-300, gnl|danRer3|chr20 (19804220-19804074)
               

               
               96-300, gnl|dasNov1|scaffold_2559 (62839-62694)
               

               
               96-300, gnl|echTel1|scaffold_310269 (84570-84707)
               

               
               96-300, gnl|fr1|chrUn (289721946-289721806)
               

               
               96-300, gnl|galGal2|chr3 (102654019-102653883)
               

               
               96-300, gnl|hg17|chr2 (27507124-27507269)
               

               
               96-300, gnl|Hg17|chr2 (27507139-27507342)
               

               
               96-300, gnl|loxAfr1|scaffold_3331 (21275-21130)
               

               
               96-300, gnl|mm7|chr5 (30227295-30227440)
               

               
               96-300, gnl|Mm7|chr5 (30227310-30227508)
               

               
               96-300, gnl|monDom2|scaffold_1 (148858013-148857866)
               

               
               96-300, gnl|oryCun1|scaffold_203841 (276-131)
               

               
               96-300, gnl|panTro1|chr12 (28450375-28450520)
               

               
               96-300, gnl|rheMac2|chr13 (27367709-27367854)
               

               
               96-300, gnl|rn3|chr6 (25161016-25160871)
               

               
               96-300, gnl|tetNig1|chr14 (5534221-5534356)
               

               
               96-300, gnl|xenTro1|scaffold_1432 (136061-136204)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	96-300, gnl\|bosTau2\|chr11 (51979868-51979667)
	96-300, gnl\|canFam2\|chr17 (24308530-24308675)
	96-300, gnl\|danRer3\|chr20 (19804220-19804074)
	96-300, gnl\|dasNov1\|scaffold_2559 (62839-62694)
	96-300, gnl\|echTel1\|scaffold_310269 (84570-84707)
	96-300, gnl\|fr1\|chrUn (289721946-289721806)
	96-300, gnl\|galGal2\|chr3 (102654019-102653883)
	96-300, gnl\|hg17\|chr2 (27507124-27507269)
	96-300, gnl\|Hg17\|chr2 (27507139-27507342)
	96-300, gnl\|loxAfr1\|scaffold_3331 (21275-21130)
	96-300, gnl\|mm7\|chr5 (30227295-30227440)
	96-300, gnl\|Mm7\|chr5 (30227310-30227508)
	96-300, gnl\|monDom2\|scaffold_1 (148858013-148857866)
	96-300, gnl\|oryCun1\|scaffold_203841 (276-131)
	96-300, gnl\|panTro1\|chr12 (28450375-28450520)
	96-300, gnl\|rheMac2\|chr13 (27367709-27367854)
	96-300, gnl\|rn3\|chr6 (25161016-25160871)
	96-300, gnl\|tetNig1\|chr14 (5534221-5534356)
	96-300, gnl\|xenTro1\|scaffold_1432 (136061-136204)