Ss1.1-rese12c_i1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGAATCCAGAAGCTTTGTTATGGGCTGAATATGGACTTTGTTGATCCTGCTCAGATCA CCATGAAAGTAATCCAAGGCTTATACAGCGGGGTCACAACGGTGGAACTGGACACTTTGG CGGCTGAAACGGCTGCCACCCTGACGACTAAGCACCCTGACTATGCCATCCTGGCAGCGA GGATTGCCGTCTCCAACTTGCACAAAGAGACAAAGAAAGTGTTCAGTGATGTGATGGAGG ACCTCTTCAACTACATAAATCCGCACAACGGCAAACACTCTCCCATGGTCGCCAAGTCAA CGCTGGATATTGTTTTGGCCAATAAAGATCGCCTGAATTCTGCCATTATCTATGACCGAG ATTTCTCTTACAATTACTTTGGCTTTAAGACGCTGGAGCGGTCCTATTTGTTGAAGATCA GTGGAAAAGTGGCCGAAAGACCACAGCATATGTTGATGAGGGTATCTGTGGGGATTCACA AAGAAGATATTGATGCTGCTATTGAAACATACAACCTTCTTTCTGAGAAGTGGTTTACCC ATGCCTCGCCCACTCTCTTCAATGCTGGCACCAACCGCCCACAGCTCTCTAGCTGTTTCC TTCTGAGTATGAAAGATGATAGCATTGAAGGCATTTATGACACTCTAAAGCAGTGTGCAT TGATTTCCAAGTCAGCTGGGGGAATTGGTGTTGCTGTGAGTTGTATTCGAGCTACTGGCA GCTACATTGCTGGGACGAATGGCAATTCCAACGGCCTTGTGCCGATGCTGAGAGTGTATA ACAACACAGCTCGATACGTGGATCAGGGTGGAAACAAGCGACCTGGGGCATTTGCTATTT ATCTGGAGCCTTGGCATTTAGACATCTTTGAGTTCCTTGATTTAAAGAAGAACACAGGGA AGGAAGAGCAGCGTGCCAGGGACCTCTTCTTTGCCCTTTGGATTCCGGATCTCTTCATGA AGCGAGTGGAGACGAATCAGGACTGGTCCTTGATGTGTCCAAATGAGTGTCCTGGTCTGG ATGAGGTCTGGGGAGAAGAATTTGAGAAGCTATATGAAAGTTATGAGAGACAGGGTCATG TCCGCAAGGTCGTAAAAGCTCAGCAGCTTTGGTATGCCATCATCGAGTCGCAGACAGAGA CAGGAACCCCATACATGCTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACC TGGGAACAATCAAATGCAGCAATCTGTGCACAGAAATAGTGGAGTACACCAGCAAAGATG AGGTTGCAGTTTGTAACTTGGCTTCCCTGGCCCTGAATATGTATGTTACATCAGAACACA CATATGACTTTACCAAGTTAGCTGAAGTCACCAAAGTTATTGTCCGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGAATCCAGAAGCTTTGTTATGGGCTGAATATGGACTTTGTTGATCCTGCTCAGATCA CCATGAAAGTAATCCAAGGCTTATACAGCGGGGTCACAACGGTGGAACTGGACACTTTGG CGGCTGAAACGGCTGCCACCCTGACGACTAAGCACCCTGACTATGCCATCCTGGCAGCGA GGATTGCCGTCTCCAACTTGCACAAAGAGACAAAGAAAGTGTTCAGTGATGTGATGGAGG ACCTCTTCAACTACATAAATCCGCACAACGGCAAACACTCTCCCATGGTCGCCAAGTCAA CGCTGGATATTGTTTTGGCCAATAAAGATCGCCTGAATTCTGCCATTATCTATGACCGAG ATTTCTCTTACAATTACTTTGGCTTTAAGACGCTGGAGCGGTCCTATTTGTTGAAGATCA GTGGAAAAGTGGCCGAAAGACCACAGCATATGTTGATGAGGGTATCTGTGGGGATTCACA AAGAAGATATTGATGCTGCTATTGAAACATACAACCTTCTTTCTGAGAAGTGGTTTACCC ATGCCTCGCCCACTCTCTTCAATGCTGGCACCAACCGCCCACAGCTCTCTAGCTGTTTCC TTCTGAGTATGAAAGATGATAGCATTGAAGGCATTTATGACACTCTAAAGCAGTGTGCAT TGATTTCCAAGTCAGCTGGGGGAATTGGTGTTGCTGTGAGTTGTATTCGAGCTACTGGCA GCTACATTGCTGGGACGAATGGCAATTCCAACGGCCTTGTGCCGATGCTGAGAGTGTATA ACAACACAGCTCGATACGTGGATCAGGGTGGAAACAAGCGACCTGGGGCATTTGCTATTT ATCTGGAGCCTTGGCATTTAGACATCTTTGAGTTCCTTGATTTAAAGAAGAACACAGGGA AGGAAGAGCAGCGTGCCAGGGACCTCTTCTTTGCCCTTTGGATTCCGGATCTCTTCATGA AGCGAGTGGAGACGAATCAGGACTGGTCCTTGATGTGTCCAAATGAGTGTCCTGGTCTGG ATGAGGTCTGGGGAGAAGAATTTGAGAAGCTATATGAAAGTTATGAGAGACAGGGTCATG TCCGCAAGGTCGTAAAAGCTCAGCAGCTTTGGTATGCCATCATCGAGTCGCAGACAGAGA CAGGAACCCCATACATGCTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACC TGGGAACAATCAAATGCAGCAATCTGTGCACAGAAATAGTGGAGTACACCAGCAAAGATG AGGTTGCAGTTTGTAACTTGGCTTCCCTGGCCCTGAATATGTATGTTACATCAGAACACA CATATGACTTTACCAAGTTAGCTGAAGTCACCAAAGTTATTGTCCGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 51-161, - strand, RNAz p=0.79643 | |
| 428-1257, - strand, RNAz p=0.875951 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 51-161, - strand, RNAz p=0.79643 | |
| 428-1257, - strand, RNAz p=0.875951 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 51-231, gnl|bosTau2|chr15 (33167957-33168137) | |
| 51-231, gnl|canFam2|chr21 (29610763-29610961) | |
| 51-231, gnl|danRer3|chr21 (16743754-16743940) | |
| 51-231, gnl|dasNov1|scaffold_67322 (2389-2586) | |
| 51-231, gnl|echTel1|scaffold_87360 (1459-1260) | |
| 51-231, gnl|fr1|chrUn (49678918-49679118) | |
| 51-231, gnl|galGal2|chr1 (188218040-188217841) | |
| 51-231, gnl|hg17|chr11 (4083845-4084044) | |
| 51-231, gnl|Hg17|chr11 (4083852-4084032) | |
| 51-231, gnl|loxAfr1|scaffold_40078 (21465-21266) | |
| 51-231, gnl|mm7|chr7 (98492642-98492841) | |
| 51-231, gnl|Mm7|chr7 (98492649-98492829) | |
| 51-231, gnl|monDom2|scaffold_74 (7287806-7288005) | |
| 51-231, gnl|panTro1|chr9 (4218900-4219099) | |
| 51-231, gnl|rheMac2|chr14 (69457963-69457764) | |
| 51-231, gnl|rn3|chr1 (160013983-160014182) | |
| 51-231, gnl|tetNig1|chr7 (5179460-5179653) | |
| 51-231, gnl|xenTro1|scaffold_1188 (203388-203189) | |
| 428-592, gnl|bosTau2|chr15 (33172293-33172457) | |
| 428-592, gnl|canFam2|chr21 (29615980-29616163) | |
| 428-592, gnl|danRer3|chr21 (16746481-16746658) | |
| 428-592, gnl|dasNov1|scaffold_5592 (18996-18811) | |
| 428-592, gnl|echTel1|scaffold_285415 (38241-38421) | |
| 428-592, gnl|fr1|chrUn (49679643-49679827) | |
| 428-592, gnl|galGal2|chr1 (188213985-188213807) | |
| 428-592, gnl|hg17|chr11 (4089687-4089872) | |
| 428-592, gnl|Hg17|chr11 (4089704-4089868) | |
| 428-592, gnl|mm7|chr7 (98496981-98497166) | |
| 428-592, gnl|Mm7|chr7 (98496998-98497162) | |
| 428-592, gnl|monDom2|scaffold_74 (7291655-7291845) | |
| 428-592, gnl|oryCun1|scaffold_213341 (7300-7485) | |
| 428-592, gnl|panTro1|chr9 (4224871-4225056) | |
| 428-592, gnl|rheMac2|chr14 (69450759-69450574) | |
| 428-592, gnl|rn3|chr14 (77411662-77411824) | |
| 428-592, gnl|tetNig1|chr7 (5180201-5180383) | |
| 428-592, gnl|xenTro1|scaffold_1188 (200924-200740) | |
| 817-981, gnl|bosTau2|chr15 (33180450-33180614) | |
| 817-981, gnl|canFam2|chr21 (29622416-29622613) | |
| 817-981, gnl|danRer3|chr21 (16749128-16749322) | |
| 817-981, gnl|echTel1|scaffold_285415 (49510-49707) | |
| 817-981, gnl|fr1|chrUn (49680282-49680469) | |
| 817-981, gnl|galGal2|chr1 (188211617-188211429) | |
| 817-981, gnl|hg17|chr11 (4099397-4099594) | |
| 817-981, gnl|Hg17|chr11 (4099408-4099572) | |
| 817-981, gnl|loxAfr1|scaffold_40078 (6482-6285) | |
| 817-981, gnl|mm7|chr7 (98503238-98503429) | |
| 817-981, gnl|Mm7|chr7 (98503249-98503413) | |
| 817-981, gnl|monDom2|scaffold_74 (7297348-7297538) | |
| 817-981, gnl|oryCun1|scaffold_212151 (40337-40139) | |
| 817-981, gnl|panTro1|chr9 (4234594-4234791) | |
| 817-981, gnl|rheMac2|chr14 (69440095-69439898) | |
| 817-981, gnl|rn3|chr14 (77412048-77412216) | |
| 817-981, gnl|tetNig1|chr7 (5180853-5181024) | |
| 817-981, gnl|xenTro1|scaffold_1188 (195504-195322) | |
| 1059-1264, gnl|bosTau2|chr15 (33183643-33183848) | |
| 1059-1264, gnl|canFam2|chr21 (29623906-29624079) | |
| 1059-1264, gnl|danRer3|chr21 (16749878-16750044) | |
| 1059-1264, gnl|dasNov1|scaffold_5592 (11871-11700) | |
| 1059-1264, gnl|fr1|chrUn (49680663-49680841) | |
| 1059-1264, gnl|galGal2|chr1 (188210341-188210179) | |
| 1059-1264, gnl|hg17|chr11 (4100977-4101150) | |
| 1059-1264, gnl|Hg17|chr11 (4100987-4101192) | |
| 1059-1264, gnl|loxAfr1|scaffold_40078 (5220-5047) | |
| 1059-1264, gnl|mm7|chr7 (98505476-98505649) | |
| 1059-1264, gnl|Mm7|chr7 (98505486-98505691) | |
| 1059-1264, gnl|monDom2|scaffold_74 (7299515-7299688) | |
| 1059-1264, gnl|oryCun1|scaffold_199825 (15133-14971) | |
| 1059-1264, gnl|panTro1|chr9 (4236205-4236379) | |
| 1059-1264, gnl|rheMac2|chr14 (69438500-69438327) | |
| 1059-1264, gnl|rn3|chr14 (77412297-77412460) | |
| 1059-1264, gnl|tetNig1|chr7 (5181231-5181403) | |
| 1059-1264, gnl|xenTro1|scaffold_1188 (194664-194502) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-231, gnl|bosTau2|chr15 (33167957-33168137) | |
| 51-231, gnl|canFam2|chr21 (29610763-29610961) | |
| 51-231, gnl|danRer3|chr21 (16743754-16743940) | |
| 51-231, gnl|dasNov1|scaffold_67322 (2389-2586) | |
| 51-231, gnl|echTel1|scaffold_87360 (1459-1260) | |
| 51-231, gnl|fr1|chrUn (49678918-49679118) | |
| 51-231, gnl|galGal2|chr1 (188218040-188217841) | |
| 51-231, gnl|hg17|chr11 (4083845-4084044) | |
| 51-231, gnl|Hg17|chr11 (4083852-4084032) | |
| 51-231, gnl|loxAfr1|scaffold_40078 (21465-21266) | |
| 51-231, gnl|mm7|chr7 (98492642-98492841) | |
| 51-231, gnl|Mm7|chr7 (98492649-98492829) | |
| 51-231, gnl|monDom2|scaffold_74 (7287806-7288005) | |
| 51-231, gnl|panTro1|chr9 (4218900-4219099) | |
| 51-231, gnl|rheMac2|chr14 (69457963-69457764) | |
| 51-231, gnl|rn3|chr1 (160013983-160014182) | |
| 51-231, gnl|tetNig1|chr7 (5179460-5179653) | |
| 51-231, gnl|xenTro1|scaffold_1188 (203388-203189) | |
| 428-592, gnl|bosTau2|chr15 (33172293-33172457) | |
| 428-592, gnl|canFam2|chr21 (29615980-29616163) | |
| 428-592, gnl|danRer3|chr21 (16746481-16746658) | |
| 428-592, gnl|dasNov1|scaffold_5592 (18996-18811) | |
| 428-592, gnl|echTel1|scaffold_285415 (38241-38421) | |
| 428-592, gnl|fr1|chrUn (49679643-49679827) | |
| 428-592, gnl|galGal2|chr1 (188213985-188213807) | |
| 428-592, gnl|hg17|chr11 (4089687-4089872) | |
| 428-592, gnl|Hg17|chr11 (4089704-4089868) | |
| 428-592, gnl|mm7|chr7 (98496981-98497166) | |
| 428-592, gnl|Mm7|chr7 (98496998-98497162) | |
| 428-592, gnl|monDom2|scaffold_74 (7291655-7291845) | |
| 428-592, gnl|oryCun1|scaffold_213341 (7300-7485) | |
| 428-592, gnl|panTro1|chr9 (4224871-4225056) | |
| 428-592, gnl|rheMac2|chr14 (69450759-69450574) | |
| 428-592, gnl|rn3|chr14 (77411662-77411824) | |
| 428-592, gnl|tetNig1|chr7 (5180201-5180383) | |
| 428-592, gnl|xenTro1|scaffold_1188 (200924-200740) | |
| 817-981, gnl|bosTau2|chr15 (33180450-33180614) | |
| 817-981, gnl|canFam2|chr21 (29622416-29622613) | |
| 817-981, gnl|danRer3|chr21 (16749128-16749322) | |
| 817-981, gnl|echTel1|scaffold_285415 (49510-49707) | |
| 817-981, gnl|fr1|chrUn (49680282-49680469) | |
| 817-981, gnl|galGal2|chr1 (188211617-188211429) | |
| 817-981, gnl|hg17|chr11 (4099397-4099594) | |
| 817-981, gnl|Hg17|chr11 (4099408-4099572) | |
| 817-981, gnl|loxAfr1|scaffold_40078 (6482-6285) | |
| 817-981, gnl|mm7|chr7 (98503238-98503429) | |
| 817-981, gnl|Mm7|chr7 (98503249-98503413) | |
| 817-981, gnl|monDom2|scaffold_74 (7297348-7297538) | |
| 817-981, gnl|oryCun1|scaffold_212151 (40337-40139) | |
| 817-981, gnl|panTro1|chr9 (4234594-4234791) | |
| 817-981, gnl|rheMac2|chr14 (69440095-69439898) | |
| 817-981, gnl|rn3|chr14 (77412048-77412216) | |
| 817-981, gnl|tetNig1|chr7 (5180853-5181024) | |
| 817-981, gnl|xenTro1|scaffold_1188 (195504-195322) | |
| 1059-1264, gnl|bosTau2|chr15 (33183643-33183848) | |
| 1059-1264, gnl|canFam2|chr21 (29623906-29624079) | |
| 1059-1264, gnl|danRer3|chr21 (16749878-16750044) | |
| 1059-1264, gnl|dasNov1|scaffold_5592 (11871-11700) | |
| 1059-1264, gnl|fr1|chrUn (49680663-49680841) | |
| 1059-1264, gnl|galGal2|chr1 (188210341-188210179) | |
| 1059-1264, gnl|hg17|chr11 (4100977-4101150) | |
| 1059-1264, gnl|Hg17|chr11 (4100987-4101192) | |
| 1059-1264, gnl|loxAfr1|scaffold_40078 (5220-5047) | |
| 1059-1264, gnl|mm7|chr7 (98505476-98505649) | |
| 1059-1264, gnl|Mm7|chr7 (98505486-98505691) | |
| 1059-1264, gnl|monDom2|scaffold_74 (7299515-7299688) | |
| 1059-1264, gnl|oryCun1|scaffold_199825 (15133-14971) | |
| 1059-1264, gnl|panTro1|chr9 (4236205-4236379) | |
| 1059-1264, gnl|rheMac2|chr14 (69438500-69438327) | |
| 1059-1264, gnl|rn3|chr14 (77412297-77412460) | |
| 1059-1264, gnl|tetNig1|chr7 (5181231-5181403) | |
| 1059-1264, gnl|xenTro1|scaffold_1188 (194664-194502) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| ese (0.126502) | |
| ebs (0.118301) |