Ss1.1-rese12c_k14.5
|
CAGCAAAGACTGGAAGAGAAGCATCCGCTACGCATGGCGGCCGCTGCAGTGCCTCATCCA
GGATGGGATCCTGAACCCTCACGCTGCCTCCTGCACCTGTGCCGCCTGCTGTGATGACAT
GACCTTGAGCGGACCTGTCAGGCTCTTCGTCCCCTACAAGCGGCGCAAGAAGGAGAGCGA
GCTGCCCGCCACGCCGGTCAAGAAGGATGTCGCCAAGAGCATCACTCTGCTTCCGGCCGC
CGCCGCCACCACCTTCACCGTGACCCCCTCAGGACAGATCACTACCTCGGGGGCGCTGAC
CTTTGACCGGGCGTCCACCGTGGAGGCCACCGCCGTCATCTCAGAGAGTCCAGCCCCGGG
CGATGTCTTTGCAGGAGCCACAGTGCAGGAAGCTGGTGTGCAGCCACCCTGCAGGGTGGG
CCACCCGGAGCCTCACTACCCCGGGTATCAGGACAGCTGTCAGATCGCACCGTTTCCAGA
GGCTGCGTTGCCAACATCTCACCCCAAAATAGTGCTGACCTCCCTGCCGGCTCTGGCCGT
GCCGCCCTCCACGCCCCCCAAAGCCGTCTCTCCGAACGTGGTCGGCGGGCTGGAGGTGTC
GGAGCAGCGGAGCTGGCTGTACCTGGAGGAGACGGTCAACTCCTTGCTGCACACGGCGCA
GCAGCTGAAGACGCTGTTTGAACAAGCCAAGCAGGCCAGCTCCTACCGAGACGCCGCCGT
GGCCCAGGCCAGAGCTCAGGCGGACGCCGAGCGGAAGGAGCAGTCCTGTGTCAACTGCGG
CCGGGAGGCCCTGAGCGAGTGCACCGGCTGCCACAAGGTCAACTACTGCTCCACCTTCTG
CCAGCGGAAGGACTGGAAGGACCACCAGCACATGTGTGGTCAGTCAGCAGCCGTGACCGT
CCAGGGGGACGAAGTCCATGTCGCTGAGGGTGTGATTGAGAAGGTCACGGTGTGAGGGCC
CCGCAGCGCCGCCAGCCTGGTGCGGGAGGCCCCTGGTGGACAGGGGACGCCGAGGACAAG
CGGAGGAGACTTGCTGGCCAAGTTACTAGCGGGCGGATCTCGAGCGACCGCGCCCTGAGA
AGGGGCGCCGGCCTTGGTGGCGGCGGCGGCCCCGCCAGGCCATCGGCGGCCGCTCACGGT
GCTTTTTTTTAACCCTCGGATCGTGAGCGTCTGCCCTTCCCCGCGGCTGTGTCGTGTTCT
GTAACACGCGTGTACATATGTGTGTCCGCCAATAAAGCTGACGCCTCTGCCCCAGTGGAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGCAAAGACTGGAAGAGAAGCATCCGCTACGCATGGCGGCCGCTGCAGTGCCTCATCCA
GGATGGGATCCTGAACCCTCACGCTGCCTCCTGCACCTGTGCCGCCTGCTGTGATGACAT
GACCTTGAGCGGACCTGTCAGGCTCTTCGTCCCCTACAAGCGGCGCAAGAAGGAGAGCGA
GCTGCCCGCCACGCCGGTCAAGAAGGATGTCGCCAAGAGCATCACTCTGCTTCCGGCCGC
CGCCGCCACCACCTTCACCGTGACCCCCTCAGGACAGATCACTACCTCGGGGGCGCTGAC
CTTTGACCGGGCGTCCACCGTGGAGGCCACCGCCGTCATCTCAGAGAGTCCAGCCCCGGG
CGATGTCTTTGCAGGAGCCACAGTGCAGGAAGCTGGTGTGCAGCCACCCTGCAGGGTGGG
CCACCCGGAGCCTCACTACCCCGGGTATCAGGACAGCTGTCAGATCGCACCGTTTCCAGA
GGCTGCGTTGCCAACATCTCACCCCAAAATAGTGCTGACCTCCCTGCCGGCTCTGGCCGT
GCCGCCCTCCACGCCCCCCAAAGCCGTCTCTCCGAACGTGGTCGGCGGGCTGGAGGTGTC
GGAGCAGCGGAGCTGGCTGTACCTGGAGGAGACGGTCAACTCCTTGCTGCACACGGCGCA
GCAGCTGAAGACGCTGTTTGAACAAGCCAAGCAGGCCAGCTCCTACCGAGACGCCGCCGT
GGCCCAGGCCAGAGCTCAGGCGGACGCCGAGCGGAAGGAGCAGTCCTGTGTCAACTGCGG
CCGGGAGGCCCTGAGCGAGTGCACCGGCTGCCACAAGGTCAACTACTGCTCCACCTTCTG
CCAGCGGAAGGACTGGAAGGACCACCAGCACATGTGTGGTCAGTCAGCAGCCGTGACCGT
CCAGGGGGACGAAGTCCATGTCGCTGAGGGTGTGATTGAGAAGGTCACGGTGTGAGGGCC
CCGCAGCGCCGCCAGCCTGGTGCGGGAGGCCCCTGGTGGACAGGGGACGCCGAGGACAAG
CGGAGGAGACTTGCTGGCCAAGTTACTAGCGGGCGGATCTCGAGCGACCGCGCCCTGAGA
AGGGGCGCCGGCCTTGGTGGCGGCGGCGGCCCCGCCAGGCCATCGGCGGCCGCTCACGGT
GCTTTTTTTTAACCCTCGGATCGTGAGCGTCTGCCCTTCCCCGCGGCTGTGTCGTGTTCT
GTAACACGCGTGTACATATGTGTGTCCGCCAATAAAGCTGACGCCTCTGCCCCAGTGGAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|62089248|dbj|BAD93068.1| |
Protein identifier
|
gi|62089248|dbj|BAD93068.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
234-383, gnl|bosTau2|chr29 (44719932-44719784) |
|
234-383, gnl|canFam2|chr18 (28736698-28736854) |
|
234-383, gnl|danRer3|chrUn (25938990-25938849) |
|
234-383, gnl|dasNov1|scaffold_93214 (2787-2940) |
|
234-383, gnl|fr1|chrUn (157366867-157366693) |
|
234-383, gnl|galGal2|chr5 (2915712-2915891) |
|
234-383, gnl|hg17|chr11 (669663-669838) |
|
234-383, gnl|Hg17|chr11 (669837-669688) |
|
234-383, gnl|mm7|chr7 (137731572-137731747) |
|
234-383, gnl|Mm7|chr7 (137731736-137731597) |
|
234-383, gnl|panTro1|chr9 (740739-740914) |
|
234-383, gnl|rheMac2|chr14 (488974-489149) |
|
234-383, gnl|rn3|chr1 (201662468-201662643) |
|
234-383, gnl|tetNig1|chr13 (10806444-10806271) |
|
234-383, gnl|xenTro1|scaffold_251 (1129266-1129427) |
| |
|
510-760, gnl|bosTau2|chr29 (44717345-44717095) |
|
510-760, gnl|Hg17|chr11 (664788-664536) |
|
510-760, gnl|Mm7|chr7 (137728275-137728025) |
| |
|
849-1254, gnl|bosTau2|chr29 (45819152-45818731) |
|
849-1254, gnl|Hg17|chr11 (634656-634222) |
|
849-1254, gnl|Mm7|chr7 (137714881-137714447) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
234-383, gnl|bosTau2|chr29 (44719932-44719784) |
|
234-383, gnl|canFam2|chr18 (28736698-28736854) |
|
234-383, gnl|danRer3|chrUn (25938990-25938849) |
|
234-383, gnl|dasNov1|scaffold_93214 (2787-2940) |
|
234-383, gnl|fr1|chrUn (157366867-157366693) |
|
234-383, gnl|galGal2|chr5 (2915712-2915891) |
|
234-383, gnl|hg17|chr11 (669663-669838) |
|
234-383, gnl|Hg17|chr11 (669837-669688) |
|
234-383, gnl|mm7|chr7 (137731572-137731747) |
|
234-383, gnl|Mm7|chr7 (137731736-137731597) |
|
234-383, gnl|panTro1|chr9 (740739-740914) |
|
234-383, gnl|rheMac2|chr14 (488974-489149) |
|
234-383, gnl|rn3|chr1 (201662468-201662643) |
|
234-383, gnl|tetNig1|chr13 (10806444-10806271) |
|
234-383, gnl|xenTro1|scaffold_251 (1129266-1129427) |
| |
|
510-760, gnl|bosTau2|chr29 (44717345-44717095) |
|
510-760, gnl|Hg17|chr11 (664788-664536) |
|
510-760, gnl|Mm7|chr7 (137728275-137728025) |
| |
|
849-1254, gnl|bosTau2|chr29 (45819152-45818731) |
|
849-1254, gnl|Hg17|chr11 (634656-634222) |
|
849-1254, gnl|Mm7|chr7 (137714881-137714447) |
|
fcc (0.593354) |
|
col (0.390016) |
|
hyp (0.285673) |
|
fce (0.271592) |
|
ese (0.253004) |
|
nms (0.213858) |
|
fbs (0.175346) |
|
cli (0.152812) |
|
pla (0.133672) |
|
ebs (0.118301) |
|
fcc (0.593354) |
|
col (0.390016) |
|
hyp (0.285673) |
|
fce (0.271592) |
|
ese (0.253004) |
|
nms (0.213858) |
|
fbs (0.175346) |
|
cli (0.152812) |
|
pla (0.133672) |
|
ebs (0.118301) |
