Ss1.1-rese12c_k16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCTGTTTGGGGTCCCTGGGTTCGGCTGAATGAAGTGGGCACAGGCTGGGATGGCTCTT GGCATGTTGTGTGCTTGTGACATGCACCTTCCTGGTGGGGAGGGGCTGGCCCAGGAGGAC CCTTGCCTTGGAGTGCCACTGTCACATCCTGGCTGGGGGGGCCATTTCACTTCATTGCTC TCATTCTCCGATTCTCCATCTGGAAACCTGGAATGGCATCAGCTCCCCGCTTGGATGGAT CATGGGGGCAAATGCTCTCCTGCCGGTTGGCAGTGCCCTGTCTGTGGCCCCGGGTAGGTG GACGGGCTCAGGCCCCGGGCCCTGCAGAAGGTTGCGTGGACAAGGGATGTTGGGCCAGGT GGGTGTCCTGGCCCCTCCCTGGGCGTGGGTCCCCTGTGAGGGAGGCTTTTCCCGCCAGGG GGCAGCAGAGGGTAAGGGAGCAGGAGGCCCTGGGTGGCACGTGGGCCCCTCTTGCTGCGC CCTCCTGTCCCGGGCGTGGTGTCTGCACCTCCAGGGGGAGAGGAGGGCAGGCCAGAGGGT GGCCAGCAGGGCCGGATCTCCGGAAACCTTGTTCCCGCAACTTTCTGAGAGGAGCCCGGG GGGCCCGCCAGCCCCATCTCCTGGGGGGGGGTTGACTTCCTTTCTCAGCCCGGGGTTGTG TCGGAAGGGTCCCAGGAGTCCTGGCCCCCTCGCCTTGGCATCCCCAGAGCCCGTTTCAAG GCTCTTGCTGTTCTTCTCGCCTGGTTTCCGATGTCCTCTGTATTTTCGGCGGAAAAGCTT GTTTAACACTGTGTGTCCTTGAAACTGTCCTCTCCCCGCGTCCCCCCCCCGGGGCTGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCTGTTTGGGGTCCCTGGGTTCGGCTGAATGAAGTGGGCACAGGCTGGGATGGCTCTT GGCATGTTGTGTGCTTGTGACATGCACCTTCCTGGTGGGGAGGGGCTGGCCCAGGAGGAC CCTTGCCTTGGAGTGCCACTGTCACATCCTGGCTGGGGGGGCCATTTCACTTCATTGCTC TCATTCTCCGATTCTCCATCTGGAAACCTGGAATGGCATCAGCTCCCCGCTTGGATGGAT CATGGGGGCAAATGCTCTCCTGCCGGTTGGCAGTGCCCTGTCTGTGGCCCCGGGTAGGTG GACGGGCTCAGGCCCCGGGCCCTGCAGAAGGTTGCGTGGACAAGGGATGTTGGGCCAGGT GGGTGTCCTGGCCCCTCCCTGGGCGTGGGTCCCCTGTGAGGGAGGCTTTTCCCGCCAGGG GGCAGCAGAGGGTAAGGGAGCAGGAGGCCCTGGGTGGCACGTGGGCCCCTCTTGCTGCGC CCTCCTGTCCCGGGCGTGGTGTCTGCACCTCCAGGGGGAGAGGAGGGCAGGCCAGAGGGT GGCCAGCAGGGCCGGATCTCCGGAAACCTTGTTCCCGCAACTTTCTGAGAGGAGCCCGGG GGGCCCGCCAGCCCCATCTCCTGGGGGGGGGTTGACTTCCTTTCTCAGCCCGGGGTTGTG TCGGAAGGGTCCCAGGAGTCCTGGCCCCCTCGCCTTGGCATCCCCAGAGCCCGTTTCAAG GCTCTTGCTGTTCTTCTCGCCTGGTTTCCGATGTCCTCTGTATTTTCGGCGGAAAAGCTT GTTTAACACTGTGTGTCCTTGAAACTGTCCTCTCCCCGCGTCCCCCCCCCGGGGCTGTTG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 40-140, + strand, RNAz p=0.800457 | |
| 259-453, - strand, RNAz p=0.999915 | |
| 357-452, + strand, RNAz p=0.820828 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-140, + strand, RNAz p=0.800457 | |
| 259-453, - strand, RNAz p=0.999915 | |
| 357-452, + strand, RNAz p=0.820828 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-162, gnl|bosTau2|chr21 (45543529-45543680) | |
| 1-162, gnl|canFam2|chr8 (72119196-72121085) | |
| 1-162, gnl|hg17|chr14 (100386815-100388835) | |
| 1-162, gnl|Hg17|chr14 (100387004-100387168) | |
| 1-162, gnl|mm7|chr12 (107083539-107085230) | |
| 1-162, gnl|Mm7|chr12 (107083693-107083857) | |
| 1-162, gnl|panTro1|chr15 (100944330-100946348) | |
| 1-162, gnl|rheMac2|chr7 (164133624-164135625) | |
| 1-162, gnl|rn3|chr6 (134146025-134147884) | |
| 254-528, gnl|bosTau2|chr21 (45543731-45544005) | |
| 254-528, gnl|canFam2|chr8 (72119196-72121085) | |
| 254-528, gnl|hg17|chr14 (100386815-100388835) | |
| 254-528, gnl|Hg17|chr14 (100387170-100387492) | |
| 254-528, gnl|mm7|chr12 (107083539-107085230) | |
| 254-528, gnl|panTro1|chr15 (100944330-100946348) | |
| 254-528, gnl|rheMac2|chr7 (164133624-164135625) | |
| 254-528, gnl|rn3|chr6 (134146025-134147884) | |
| 643-776, gnl|bosTau2|chr21 (45544184-45544314) | |
| 643-776, gnl|canFam2|chr8 (72119196-72121085) | |
| 643-776, gnl|hg17|chr14 (100386815-100388835) | |
| 643-776, gnl|Hg17|chr14 (100387716-100387841) | |
| 643-776, gnl|mm7|chr12 (107083539-107085230) | |
| 643-776, gnl|panTro1|chr15 (100944330-100946348) | |
| 643-776, gnl|rheMac2|chr7 (164133624-164135625) | |
| 643-776, gnl|rn3|chr6 (134146025-134147884) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-162, gnl|bosTau2|chr21 (45543529-45543680) | |
| 1-162, gnl|canFam2|chr8 (72119196-72121085) | |
| 1-162, gnl|hg17|chr14 (100386815-100388835) | |
| 1-162, gnl|Hg17|chr14 (100387004-100387168) | |
| 1-162, gnl|mm7|chr12 (107083539-107085230) | |
| 1-162, gnl|Mm7|chr12 (107083693-107083857) | |
| 1-162, gnl|panTro1|chr15 (100944330-100946348) | |
| 1-162, gnl|rheMac2|chr7 (164133624-164135625) | |
| 1-162, gnl|rn3|chr6 (134146025-134147884) | |
| 254-528, gnl|bosTau2|chr21 (45543731-45544005) | |
| 254-528, gnl|canFam2|chr8 (72119196-72121085) | |
| 254-528, gnl|hg17|chr14 (100386815-100388835) | |
| 254-528, gnl|Hg17|chr14 (100387170-100387492) | |
| 254-528, gnl|mm7|chr12 (107083539-107085230) | |
| 254-528, gnl|panTro1|chr15 (100944330-100946348) | |
| 254-528, gnl|rheMac2|chr7 (164133624-164135625) | |
| 254-528, gnl|rn3|chr6 (134146025-134147884) | |
| 643-776, gnl|bosTau2|chr21 (45544184-45544314) | |
| 643-776, gnl|canFam2|chr8 (72119196-72121085) | |
| 643-776, gnl|hg17|chr14 (100386815-100388835) | |
| 643-776, gnl|Hg17|chr14 (100387716-100387841) | |
| 643-776, gnl|mm7|chr12 (107083539-107085230) | |
| 643-776, gnl|panTro1|chr15 (100944330-100946348) | |
| 643-776, gnl|rheMac2|chr7 (164133624-164135625) | |
| 643-776, gnl|rn3|chr6 (134146025-134147884) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |